Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/7bdfcf8e3f6f3ff68a196831b36a35/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/7bdfcf8e3f6f3ff68a196831b36a35/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/12ad6a26a878c520d87eef6d12217c/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/715d94e7b803327d6eeb03a723c140/germline_control_2.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/12ad6a26a878c520d87eef6d12217c/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/715d94e7b803327d6eeb03a723c140/germline_control_2.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.OVtuuL
Merging 1 temporary files
Done
Cleaning