Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/686ce2ca7c6a98cad1d647fd3cc61a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1efc95d887ebdaf1c9892b5421119a/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1efc95d887ebdaf1c9892b5421119a/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/686ce2ca7c6a98cad1d647fd3cc61a/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:26.341269Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:26.343098Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:26.343124Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:26.343130Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:26.343135Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDJa9Q5'
[2026-05-28T05:36:26.343139Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:26.343144Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:26.343148Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:26.343151Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-28T05:36:26.343155Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:26.343158Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:26.343162Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:26.343166Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:26.343169Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:26.344097Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:26.344190Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:26.350078Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:26.350697Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:26.350872Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:26.351260Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:26.351585Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.352510Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.352606Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.352680Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.353073Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.353278Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.353449Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.354151Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.354364Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.354488Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.354694Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.356782Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.357053Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.357288Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.357449Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:26.357916Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.358105Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.358520Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.358672Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.358737Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.358934Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359000Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359111Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359179Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359292Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359355Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359468Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359531Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.359686Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360044Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360154Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360242Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360357Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360416Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360523Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360585Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360693Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360754Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360859Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.360920Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361036Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361263Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361625Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361735Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361843Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.361904Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362021Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362083Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362246Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362350Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362459Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362519Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362629Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.362749Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.363064Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.363512Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.378499Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.378945Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379012Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379171Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379242Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379324Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379392Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379496Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379563Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:26.379616Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:26.387706Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.388278Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.388591Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.389529Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.393277Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:26.393692Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.394168Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-28T05:36:26.394668Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.398112Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.398803Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:26.399018Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.400943Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.406261Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-28T05:36:26.409998Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:26.410956Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-28T05:36:26.414105Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-28T05:36:26.517812Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.517919Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.517944Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.517969Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.518716Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.521204Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.522002Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.522964Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:26.523248Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.531035Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-28T05:36:26.531526Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:26.532415Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-28T05:36:26.589911Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.590018Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.590748Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.592118Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.597052Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:26.598621Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-28T05:36:27.515625Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-28T05:36:27.561492Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.562283Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.565988Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-28T05:36:27.627245Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.628039Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.631740Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-28T05:36:27.636401Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.637049Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.640582Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-28T05:36:27.852373Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.853069Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:27.856756Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-28T05:36:28.318935Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.319660Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.323801Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-28T05:36:28.385095Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.385883Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.389265Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-28T05:36:28.450548Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.451307Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.455495Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-28T05:36:28.916767Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.917516Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.921230Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-28T05:36:28.982452Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.983251Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.987144Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:29.047936Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.048684Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.052479Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-28T05:36:29.053234Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.053858Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.057439Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-28T05:36:29.086587Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.087469Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.091990Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-28T05:36:29.454589Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.455351Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.458564Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-28T05:36:29.519767Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.520578Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.524206Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-28T05:36:29.735859Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.736702Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.740710Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-28T05:36:29.801448Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.802340Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.806167Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-28T05:36:29.867234Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.867938Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.871727Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:30.133498Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.134234Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.137949Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-28T05:36:30.166722Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.167419Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.170699Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-28T05:36:30.175630Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.176191Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.179515Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-28T05:36:30.208753Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.209402Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.213679Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-28T05:36:30.374674Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.375393Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.379069Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-28T05:36:31.042771Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.043599Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.047214Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-28T05:36:31.108538Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.109248Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.112905Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-28T05:36:31.224258Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.224920Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.228677Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:31.259077Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.259720Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.262357Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.263060Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-28T05:36:31.263402Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.266546Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-28T05:36:31.327780Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.327892Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.328478Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.329150Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.332758Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-28T05:36:31.334048Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-28T05:36:31.395464Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.395558Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.396020Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.396608Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.401387Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:31.402505Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-28T05:36:31.405938Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.406462Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.409865Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-28T05:36:31.438947Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.439560Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.442978Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:31.443867Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.444372Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.447499Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:31.508628Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.508759Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.509286Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.512980Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:31.541997Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.542552Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.545946Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-28T05:36:31.559041Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.591212Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.655432Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.655975Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.659324Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-28T05:36:31.720582Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.834921Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.835518Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:31.839163Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-28T05:36:31.900426Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.817390Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.817913Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:32.821256Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-28T05:36:32.882623Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.147362Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.147890Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.150870Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-28T05:36:33.212507Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.276761Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.277265Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.280257Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-28T05:36:33.342724Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.343025Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.343218Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.343976Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.344602Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.349315Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:33.351141Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:33.352401Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:33.409764Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.409874Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.409897Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.410202Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.410934Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.415332Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:33.416600Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:33.446357Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.446455Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.446713Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:33.449883Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:33.479168Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.950816Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:45.231936Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:45.231936Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] 
[2026-05-28T05:36:45.231936Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:45.232012Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] 
[2026-05-28T05:36:45.232020Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:45.232026Z] [nf-fc686ce2ca7c6a98cad1d647fd3cc61a-da0a8-8m2pp] [611_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec