Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/2a6287654cb27dcaeedf043971dc27/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/2a6287654cb27dcaeedf043971dc27/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:11.696858Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:11.724822Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:11.724854Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:11.724859Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:11.724864Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXLdlA7n'
[2026-05-28T05:36:11.724868Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:11.724875Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:11.724880Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:11.724883Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:11.724887Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:11.724891Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:11.724895Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:11.724899Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:11.724904Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:11.725532Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:11.725659Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:11.732327Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:11.733096Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:11.733341Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:11.733600Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:11.733843Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.734527Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.734618Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.734691Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.734832Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.734902Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.735053Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.735294Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.735679Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.735829Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.735986Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.736456Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.737030Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.737272Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.738917Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.739441Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:11.739607Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.739809Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.739928Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.739993Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740177Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740242Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740354Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740420Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740530Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740590Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740710Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.740772Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741078Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741366Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741481Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741556Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741669Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741730Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741838Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.741900Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742009Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742073Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742187Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742246Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742359Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742502Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.742758Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.743220Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.743646Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.743710Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.743840Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.743905Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744106Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744173Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744290Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744355Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744463Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744522Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.744729Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745156Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745280Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745343Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745446Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745507Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745615Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745677Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745787Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745851Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.745958Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.746026Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.746133Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.746254Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.746862Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.746929Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.747040Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.747102Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.747210Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.747272Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.764117Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.764590Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.764667Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.764847Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.764919Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.765007Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.765070Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.765182Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.765254Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.765299Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:11.768038Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.768670Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.768904Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.769260Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.770010Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.770642Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.771628Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.772591Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.773507Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.778427Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:11.782510Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-28T05:36:11.786630Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:11.788286Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-28T05:36:11.790057Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:11.790163Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:11.790594Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-28T05:36:11.843433Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:11.890228Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.890307Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.890333Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.891179Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.891484Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.892073Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.897084Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:11.898521Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-28T05:36:12.258673Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.259534Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.262556Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-28T05:36:12.724890Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.725934Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.728960Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:12.790008Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.790822Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.793827Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:12.794688Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.795389Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.797946Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-28T05:36:12.827307Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.827381Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.828098Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.828388Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.831665Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:12.832642Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-28T05:36:12.861933Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.862741Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.865525Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:12.926847Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.927595Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.930563Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:13.142338Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.143393Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.146422Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:13.147679Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:13.151225Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.152419Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.152637Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.153901Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.156945Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:13.184936Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:13.186405Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.187269Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.189957Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:13.401425Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.402419Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.405287Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:13.666988Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.667833Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.670763Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:13.732263Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.732999Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.735775Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:13.797023Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.797836Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.800917Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:13.962455Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.963271Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.966730Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-28T05:36:14.027572Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.028408Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.031336Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:14.092532Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.092615Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.093442Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.093867Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.096701Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:14.098012Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-28T05:36:14.126939Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.127012Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.127735Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.128184Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.131094Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:14.132380Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:14.192624Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.193486Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.196825Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:14.308322Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.309188Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.312239Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:14.423651Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.424646Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.427952Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:14.489019Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.489136Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.489778Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.490142Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.493055Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-28T05:36:14.494236Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-28T05:36:14.554621Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.555426Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.558368Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-28T05:36:14.619778Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.620553Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.623616Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:15.136540Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.137307Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.140398Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:15.201890Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.202626Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.205710Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-28T05:36:15.267093Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.267839Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.270842Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:15.299953Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.300690Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.303991Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:15.365100Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.365896Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.369068Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-28T05:36:15.381889Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.382583Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.385390Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:15.446723Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.447464Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.451003Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:15.455238Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.455754Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.458373Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:15.487698Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.488445Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.490380Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.491049Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.491430Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:15.494208Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-28T05:36:15.523136Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.523800Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.527165Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-28T05:36:15.588014Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.588742Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.591987Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-28T05:36:15.653468Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.654115Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.657031Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:15.662367Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.662962Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.665676Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:15.695042Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.695143Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.695693Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.695994Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.699136Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:15.726366Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:15.729000Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.729092Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.729994Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.730456Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.733554Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:15.734522Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:15.762920Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.763512Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.766333Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:15.827660Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.827760Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.828336Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.828834Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.831790Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:15.832913Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:15.893430Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.894117Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.896840Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:15.958374Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.959074Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.961774Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:15.991237Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.991818Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.994376Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:16.023758Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.024355Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.027955Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-28T05:36:16.056808Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.057359Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.060082Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-28T05:36:16.121779Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.236244Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.236753Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.239470Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-28T05:36:16.268740Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.533555Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.534100Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.537232Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-28T05:36:16.598376Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.630460Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.630959Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.633967Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-28T05:36:16.695157Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.059946Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.060462Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.063656Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:17.124884Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.188962Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.189485Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.192282Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-28T05:36:17.221547Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.787278Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.787805Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.791118Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-28T05:36:17.820264Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.185308Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.185805Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.188751Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:18.217881Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.218202Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.218361Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.218701Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.219508Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.222946Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:18.224538Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:18.225455Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:18.252888Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.252977Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.253221Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.255597Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:18.269008Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.269283Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.271732Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:18.285138Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.316866Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.317141Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.319854Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:18.349118Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.323484Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:30.613940Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:30.613940Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] 
[2026-05-28T05:36:30.613940Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:30.614012Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] 
[2026-05-28T05:36:30.614028Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:30.614035Z] [nf-0a2a6287654cb27dcaeedf043971dc27-5050d-kjkxs] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec