[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXaUbeyx/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXaUbeyx/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXaUbeyx/chr19_15162349-15162662.bed.gz.tbi
[2026-05-28T05:36:16.274111Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:16.276159Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:16.276184Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:16.276193Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:16.276200Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXaUbeyx'
[2026-05-28T05:36:16.276207Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:16.276216Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:16.276224Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:16.276231Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] memMb: 386571
[2026-05-28T05:36:16.276238Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:16.276244Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:16.276255Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:16.276262Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:16.276269Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:16.276736Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:16.276911Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:16.287722Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:16.288751Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:16.288872Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:16.289152Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:16.289394Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.289958Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.290112Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.290242Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.290615Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.290941Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.291042Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.291348Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.291507Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.292204Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.292466Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.292785Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.292960Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.295207Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.295475Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:16.295535Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.295773Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.295905Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.296125Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.296250Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.296950Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.297100Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.297314Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.297440Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.297648Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.297765Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.297979Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.298122Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.298806Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.298987Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.299213Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.299340Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.299562Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.299683Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.299893Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.300013Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.300250Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.300432Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.301277Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.301994Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.302213Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.302335Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.302550Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.302676Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.303923Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.304125Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.305032Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.305315Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.306319Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.307184Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.307456Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.307588Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.307805Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.307928Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.308144Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.308265Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.308507Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.309548Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.309787Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.309949Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.310167Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.310289Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.310504Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.310626Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.310939Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.311993Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.335698Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.336919Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.337074Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.337356Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.337495Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.337656Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.337783Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.337991Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.340171Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.340423Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:16.340708Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.342665Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.343107Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.343643Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.344245Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.344846Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.345638Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.346428Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.347140Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.353487Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-28T05:36:16.357997Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-28T05:36:16.362802Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-28T05:36:16.364796Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-28T05:36:16.370489Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-28T05:36:17.722342Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.723489Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.727088Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:17.838277Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.839461Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.842746Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-28T05:36:18.652757Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:18.655616Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.657703Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.661479Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-28T05:36:18.772408Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.774275Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.777723Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-28T05:36:19.083194Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:19.089185Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.090971Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.094440Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:19.205691Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.205799Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.206903Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.207251Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.211706Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-28T05:36:19.212659Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-28T05:36:19.501189Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:19.522352Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.522460Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.523534Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.523809Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.527517Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-28T05:36:19.528562Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-28T05:36:19.588536Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.589615Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.592726Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:19.593374Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.594320Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.597719Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-28T05:36:19.658957Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.660058Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.663487Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-28T05:36:19.676348Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.677433Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.681091Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:19.792212Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.793325Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.796744Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:19.857844Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.858931Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.862079Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:19.923434Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.924548Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.927932Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-28T05:36:20.691204Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.692280Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.695818Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-28T05:36:20.756802Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.757885Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.761233Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-28T05:36:20.822366Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.823451Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.826936Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:20.887933Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.888993Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.892401Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:20.953499Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.954584Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.958352Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-28T05:36:21.019429Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.020486Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.023858Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-28T05:36:21.084916Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.085974Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.089490Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:21.250906Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.251938Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.255518Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-28T05:36:21.316354Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.317298Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.320420Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-28T05:36:21.381578Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.382581Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.385925Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:21.547418Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.547541Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.548492Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.548952Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.552560Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-28T05:36:21.553364Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-28T05:36:21.613750Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.613887Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.614771Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.615137Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.618906Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-28T05:36:21.620153Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-28T05:36:21.679822Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.680755Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.684219Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:22.046014Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.046977Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.050232Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:22.111364Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.112324Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.115775Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:22.377608Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.377712Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.378559Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.378930Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.382307Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-28T05:36:22.383617Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:22.443359Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.443468Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.444312Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.444640Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.448570Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-28T05:36:22.449512Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-28T05:36:22.760558Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.761470Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.764656Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-28T05:36:22.825842Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.826770Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.830019Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:22.941359Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.942254Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.945327Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-28T05:36:23.909465Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.909570Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.910351Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.910709Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.914226Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-28T05:36:23.915361Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-28T05:36:23.975362Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.975474Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.976266Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.976653Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.980849Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:23.982288Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-28T05:36:24.843964Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.844776Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.847918Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:24.909230Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.910059Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.913202Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:24.974274Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.975101Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.978739Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-28T05:36:25.290549Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.291357Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.294593Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:25.299296Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.299979Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.303213Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-28T05:36:25.364164Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.364262Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.364938Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.365358Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.368640Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:25.370005Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-28T05:36:25.429753Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.429872Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.694890Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.695637Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.699011Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:25.759983Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.924729Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.925798Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.929101Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-28T05:36:25.989966Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.204754Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.205798Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.208493Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-28T05:36:26.237700Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.238338Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.241056Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-28T05:36:26.246008Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.310360Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.879841Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.880451Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:28.883240Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:28.944551Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.359946Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.360741Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.363591Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-28T05:36:29.424986Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.425480Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.425636Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.425857Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.426233Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.429416Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:29.430776Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:29.431734Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:29.491300Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.491365Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.491401Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.491692Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.492009Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.494936Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:29.496322Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:29.556387Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.556467Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.556739Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.559266Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:29.621091Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:35.287719Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:49.396304Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:49.396304Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] 
[2026-05-28T05:36:49.396304Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:49.396423Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] 
[2026-05-28T05:36:49.396451Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:49.396487Z] [nf-383923d4616c06acaedc4dc1bde74388-e07b5-hp8gd] [673_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec