Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/5cd7c265b2cc076d03b95fd466ac67/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e1c2a3972c64d0745e49884e28896c/Sig_18_tissue.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/5cd7c265b2cc076d03b95fd466ac67/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e1c2a3972c64d0745e49884e28896c/Sig_18_tissue.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.0s, est remaining 0.4s, peak mem 102MB, user 0.1s, sys 0.3s, output queue size 9
progress 10% @chr2:74000001, elapsed 0.0s, est remaining 0.4s, peak mem 102MB, user 0.1s, sys 0.9s, output queue size 15
progress 15% @chr2:230000001, elapsed 0.1s, est remaining 0.5s, peak mem 102MB, user 0.2s, sys 1.9s, output queue size 13
progress 20% @chr3:146000001, elapsed 0.1s, est remaining 0.5s, peak mem 102MB, user 0.3s, sys 3.0s, output queue size 12
progress 25% @chr4:109000001, elapsed 0.2s, est remaining 0.5s, peak mem 102MB, user 0.4s, sys 4.2s, output queue size 7
progress 30% @chr5:78000001, elapsed 0.2s, est remaining 0.5s, peak mem 102MB, user 0.5s, sys 5.4s, output queue size 18
progress 35% @chr6:57000001, elapsed 0.2s, est remaining 0.5s, peak mem 102MB, user 0.6s, sys 6.6s, output queue size 30
progress 40% @chr7:51000001, elapsed 0.3s, est remaining 0.4s, peak mem 102MB, user 0.7s, sys 7.8s, output queue size 22
progress 45% @chr8:49000001, elapsed 0.3s, est remaining 0.4s, peak mem 102MB, user 0.9s, sys 8.9s, output queue size 13
progress 50% @chr9:76000001, elapsed 0.4s, est remaining 0.4s, peak mem 102MB, user 0.9s, sys 10.1s, output queue size 19
progress 55% @chr10:88000001, elapsed 0.4s, est remaining 0.3s, peak mem 102MB, user 0.9s, sys 11.3s, output queue size 7
progress 60% @chr11:119000001, elapsed 0.5s, est remaining 0.3s, peak mem 102MB, user 1.0s, sys 12.5s, output queue size 26
progress 65% @chr13:10000001, elapsed 0.5s, est remaining 0.3s, peak mem 102MB, user 1.1s, sys 13.6s, output queue size 13
progress 70% @chr14:55000001, elapsed 0.5s, est remaining 0.2s, peak mem 102MB, user 1.2s, sys 14.8s, output queue size 27
progress 75% @chr16:5000001, elapsed 0.6s, est remaining 0.2s, peak mem 102MB, user 1.3s, sys 15.9s, output queue size 15
progress 80% @chr17:77000001, elapsed 0.6s, est remaining 0.2s, peak mem 102MB, user 1.4s, sys 17.1s, output queue size 9
progress 85% @chr20:16000001, elapsed 0.7s, est remaining 0.1s, peak mem 102MB, user 1.5s, sys 18.3s, output queue size 18
progress 90% @chrX:43000001, elapsed 0.7s, est remaining 0.1s, peak mem 117MB, user 1.9s, sys 19.0s, output queue size 114
progress 95% @chrY:29000001, elapsed 0.8s, est remaining 0.0s, peak mem 126MB, user 2.5s, sys 20.0s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 144MB, user 3.5s, sys 21.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50047074
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.274 user 11.245 sys 12.196 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.002 sys 1.255 real
idle: 80 calls 0.007 user 0.026 sys 43.979 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 151044096 mem 3.784 user 22.022 sys 2.409 real