File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/c9e91507588a2419aec7d9a3f81937/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-28T05:36:06.625840Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:06.627017Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:06.627030Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:06.627034Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:06.627038Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXWPKtmV'
[2026-05-28T05:36:06.627042Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:06.627046Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:06.627050Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:06.627053Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:06.627057Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:06.627061Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:06.627064Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:06.627068Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:06.627072Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:06.628022Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:06.628082Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:06.633847Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:06.634568Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:06.634740Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:06.635025Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:06.635288Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.636121Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.636215Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.636318Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.636626Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.636879Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637093Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637229Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637309Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637419Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637494Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637778Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.637912Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.638364Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.638612Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.640097Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.640622Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.640952Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641057Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:06.641225Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641420Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641488Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641601Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641668Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641781Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.641854Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.642283Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.642544Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.642844Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.642908Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643017Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643119Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643258Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643326Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643441Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643511Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643622Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643688Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.643939Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644268Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644419Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644483Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644594Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644662Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644768Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644830Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.644940Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.645005Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.645169Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.645233Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.645446Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.645860Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.645972Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646033Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646141Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646202Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646347Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646421Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646533Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646599Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646713Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646774Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.646935Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.647446Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.647673Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648177Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648297Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648361Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648473Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648539Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648653Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648716Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648824Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.648886Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665066Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665442Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665516Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665685Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665754Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665840Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.665907Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.666015Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.666085Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:06.666130Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:06.667638Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.668344Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.668958Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.669570Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.670603Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.671618Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.672728Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.673781Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.675723Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-28T05:36:06.677538Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.678763Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:06.683373Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:06.685525Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-28T05:36:06.687860Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:06.690838Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:06.692120Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:06.693355Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:06.743538Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.744229Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:06.747857Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-28T05:36:07.209886Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.210763Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.213884Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:07.676240Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.676384Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.677195Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.677476Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.680771Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:07.681581Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.682601Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.685085Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:07.734064Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:07.746558Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.746632Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.746664Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.747666Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.748080Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.748402Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.751432Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:07.752562Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:07.753381Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:07.781658Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.781747Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.781784Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.782765Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.783013Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.783449Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.787297Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-28T05:36:07.787649Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-28T05:36:07.788463Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:07.815872Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.815961Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.816995Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.817311Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.820623Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-28T05:36:07.821222Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:07.881736Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.882808Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.885997Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-28T05:36:07.997052Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:07.998173Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.001279Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-28T05:36:08.030571Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.031399Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.034238Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:08.095551Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.096398Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.099395Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:08.160588Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.161400Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.164413Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:08.627145Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.628007Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.631228Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:08.692463Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.693014Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.693097Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.693856Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.694482Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.696679Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.697084Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:08.700116Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:08.701098Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:08.732291Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.732362Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.732386Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.732983Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.733262Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.735047Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.736008Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-28T05:36:08.738339Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:08.739492Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:08.767671Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.768311Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.771195Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-28T05:36:08.882947Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.883737Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.886951Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:08.948411Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.949124Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.952175Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:08.981247Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.981918Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:08.984741Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:09.096342Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.096448Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.097154Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.097657Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.100456Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:09.101587Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-28T05:36:09.130046Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.130705Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.132532Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.133261Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.133428Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-28T05:36:09.136033Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:09.347922Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.348623Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.352202Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:09.514039Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.514692Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.517642Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:09.579054Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.579818Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.582691Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-28T05:36:09.611852Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.612561Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.615387Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:09.776817Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.777538Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.780265Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:09.809634Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.810326Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.813310Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-28T05:36:09.924636Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.925308Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.928774Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:09.989453Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.990344Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:09.993633Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:10.022630Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.023296Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.026062Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-28T05:36:10.055611Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.055706Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.056341Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.056690Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.059719Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:10.060753Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:10.088933Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.089562Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.092286Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-28T05:36:10.454653Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.454738Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.455358Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.455751Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.458887Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:10.459644Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:10.488847Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.489561Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.491502Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.492267Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.492556Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:10.495028Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:10.524544Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.525156Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.528244Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:10.541261Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.541842Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.544687Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:10.606048Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.606139Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.606817Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.607085Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.610430Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:10.610957Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.611296Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:10.611896Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.614440Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-28T05:36:10.643894Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.643993Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.644030Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.644543Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.644849Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.645111Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.648782Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-28T05:36:10.650303Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-28T05:36:10.650858Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-28T05:36:10.678558Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.679102Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.681834Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:10.710997Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.825550Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.826099Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:10.829035Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:10.890342Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.054768Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.055323Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.058111Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-28T05:36:11.119654Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.183880Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.184415Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.187315Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-28T05:36:11.248724Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.563806Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.564333Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.567354Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:11.628401Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.792673Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.793158Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795798Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-28T05:36:11.825183Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.792176Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.792983Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.793721Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.795415Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.796814Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-28T05:36:12.797640Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:12.827467Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.827540Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.827823Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.827972Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.828229Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.828608Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.832995Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:12.834875Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:12.835224Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:12.862721Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.863174Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.863659Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.864087Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.864498Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.867452Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:12.868532Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:12.898272Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.898354Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.898571Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.901219Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:12.962995Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.237928Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:25.516424Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:25.516424Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] 
[2026-05-28T05:36:25.516424Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:25.516487Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] 
[2026-05-28T05:36:25.516499Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:25.516506Z] [nf-f6c9e91507588a2419aec7d9a3f81937-25e6e-k4skt] [581_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec