File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/d7a0fb99ace0c088a7f8e7f0d31f45/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXTJRgXq/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXTJRgXq/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXTJRgXq/chr19_15162349-15162662.bed.gz.tbi
[2026-05-28T05:36:19.069467Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:19.070188Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:19.070200Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:19.070204Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:19.070209Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXTJRgXq'
[2026-05-28T05:36:19.070213Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:19.070218Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:19.070222Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:19.070226Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-05-28T05:36:19.070230Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:19.070233Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:19.070237Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:19.070241Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:19.070245Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:19.071168Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:19.071260Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:19.077508Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:19.078231Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:19.078332Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:19.078691Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:19.078985Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079407Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079500Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079574Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079691Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079760Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079881Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.079945Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.080116Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.080391Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.080808Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.081045Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.081515Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.082158Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.084358Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.084822Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.085261Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:19.085487Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.085631Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.085700Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.085888Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.085957Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.086073Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.086143Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.086256Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.086320Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.086751Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087024Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087140Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087244Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087362Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087429Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087571Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087637Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087752Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087817Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087928Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.087994Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.088198Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.088403Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.089023Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.089123Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.089254Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.089324Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.090035Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.090235Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.090768Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.090837Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091033Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091103Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091221Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091290Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091407Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091472Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091592Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091657Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.091915Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092426Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092541Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092608Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092751Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092815Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092929Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.092994Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.093139Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.093212Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.110111Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.110831Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.110980Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.111184Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.111261Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.111356Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.111427Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.111538Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.113146Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:19.114034Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:19.114271Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.115087Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.115769Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.116786Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.118464Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.119444Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.121920Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.123674Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:19.124091Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.128222Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-28T05:36:19.131502Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.135007Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:19.135653Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:19.140618Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:19.141294Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:19.144926Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:19.148757Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-28T05:36:19.204790Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.204882Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.205694Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.206215Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.211331Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-28T05:36:19.212005Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-28T05:36:19.222955Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.223748Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.227251Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-28T05:36:19.639098Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.639989Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.643886Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-28T05:36:20.406677Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.407506Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.410870Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:20.472174Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.473082Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.476506Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-28T05:36:20.688618Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.689571Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.693272Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-28T05:36:20.804404Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.805295Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.808562Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-28T05:36:21.171198Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.171991Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.175433Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-28T05:36:21.204498Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.205343Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.208481Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-28T05:36:21.209048Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.209621Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.212321Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:21.241768Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.242533Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.245644Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:21.250766Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.251452Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.254452Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:21.267682Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.268372Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.271578Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:21.332741Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.333551Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.336980Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:21.398295Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.399383Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.402490Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:21.564449Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.565264Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.568508Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-28T05:36:21.880324Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.881073Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.884730Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-28T05:36:21.945657Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.946486Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.949832Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:22.061058Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.061839Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.064631Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:22.126225Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.126978Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.129978Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-28T05:36:22.191413Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.192176Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.195748Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-28T05:36:22.357110Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.357926Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.362200Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-28T05:36:22.423117Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.424004Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.427893Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-28T05:36:22.489626Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.490433Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.493799Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:22.555056Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.555900Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.559241Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:22.572153Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.572972Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.576127Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-28T05:36:22.589275Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.589995Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.593536Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-28T05:36:22.622641Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.623453Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.626854Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-28T05:36:22.688462Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.689454Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.693257Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-28T05:36:23.055527Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.056379Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.059725Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:23.120951Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.121723Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.125999Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-28T05:36:23.237230Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.238028Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.242185Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-28T05:36:23.246795Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.247360Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.250754Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-28T05:36:23.312118Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.312913Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.316457Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:23.377733Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.378459Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.382129Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:23.443624Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.444372Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.447603Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-28T05:36:23.477072Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.477745Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.481396Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-28T05:36:23.542470Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.543276Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.546883Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:23.559619Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.560193Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.563390Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-28T05:36:23.576380Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.576949Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.580113Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:23.609002Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.609512Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.612740Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:23.674053Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.674608Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.678069Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-28T05:36:23.707007Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.707603Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.710635Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-28T05:36:23.772017Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.772683Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.776231Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-28T05:36:23.837316Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.837965Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.841373Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:23.902642Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.903296Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.906627Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-28T05:36:23.968121Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.968862Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.972180Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-28T05:36:24.033303Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.033913Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.037631Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-28T05:36:24.098550Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.099219Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.102733Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-28T05:36:24.131798Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.296477Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.297078Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.300493Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-28T05:36:24.361868Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.576765Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.577321Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.580811Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-28T05:36:24.609696Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.924598Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.925161Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.928542Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-28T05:36:24.941862Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.942306Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.945088Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-28T05:36:24.958185Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.990135Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.304984Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.305477Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.308870Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-28T05:36:25.369875Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.734755Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.735223Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.738714Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-28T05:36:25.799745Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.364936Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.365350Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.368627Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:26.429668Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.429921Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.430054Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.430368Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.431450Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.434496Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:26.436208Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:26.437315Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:26.466834Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.466902Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.466924Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.467115Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.467418Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.470003Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:26.471079Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:26.499466Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.499539Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.499723Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.501983Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:26.531722Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:29.703711Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:37.959449Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:37.959449Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] 
[2026-05-28T05:36:37.959449Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:37.959531Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] 
[2026-05-28T05:36:37.959540Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:37.959547Z] [nf-bcd7a0fb99ace0c088a7f8e7f0d31f45-f0bf5-xs965] [671_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec