cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.1s, est remaining 1.1s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 2520
progress 10% @chr2:19997134, elapsed 0.1s, est remaining 1.0s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 2777
progress 15% @chr2:189034916, elapsed 0.2s, est remaining 0.9s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 5060
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.9s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 15525
progress 25% @chr4:88467059, elapsed 0.3s, est remaining 0.8s, peak mem 167MB, user 0.0s, sys 0.0s, output queue size 5778
progress 30% @chr5:146514854, elapsed 0.3s, est remaining 0.7s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 15827
progress 35% @chr6:127137390, elapsed 0.4s, est remaining 0.7s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 25767
progress 40% @chr7:128775439, elapsed 0.4s, est remaining 0.6s, peak mem 176MB, user 0.0s, sys 0.0s, output queue size 2051
progress 45% @chr9:731158, elapsed 0.5s, est remaining 0.6s, peak mem 344MB, user 0.0s, sys 0.0s, output queue size 11423
progress 50% @chr10:32584232, elapsed 0.5s, est remaining 0.5s, peak mem 347MB, user 0.0s, sys 0.1s, output queue size 21361
progress 55% @chr11:48245104, elapsed 0.5s, est remaining 0.4s, peak mem 347MB, user 0.0s, sys 0.1s, output queue size 31825
progress 60% @chr12:22055149, elapsed 0.6s, est remaining 0.4s, peak mem 353MB, user 0.0s, sys 0.1s, output queue size 41375
progress 65% @chr13:49274291, elapsed 0.6s, est remaining 0.3s, peak mem 356MB, user 0.0s, sys 0.1s, output queue size 52427
progress 70% @chr15:42684116, elapsed 0.7s, est remaining 0.3s, peak mem 365MB, user 0.0s, sys 0.1s, output queue size 6169
progress 75% @chr16:30942116, elapsed 0.7s, est remaining 0.2s, peak mem 365MB, user 0.0s, sys 0.1s, output queue size 15706
progress 80% @chr17:42543028, elapsed 0.8s, est remaining 0.2s, peak mem 365MB, user 0.0s, sys 0.1s, output queue size 26391
progress 85% @chr19:5304602, elapsed 0.9s, est remaining 0.2s, peak mem 401MB, user 0.0s, sys 0.1s, output queue size 36804
progress 90% @chr19:55688870, elapsed 0.9s, est remaining 0.1s, peak mem 401MB, user 0.0s, sys 0.1s, output queue size 46303
progress 95% @chr22:36937342, elapsed 1.3s, est remaining 0.1s, peak mem 2480MB, user 6.0s, sys 3.7s, output queue size 3222
progress 100% @chr6_GL000251v2_alt:3946951, elapsed 1.4s, est remaining 0.0s, peak mem 2480MB, user 6.1s, sys 3.7s, output queue size 335
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813916
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.882 user 0.186 sys 2.217 real
done: 1 calls 0.284 user 0.098 sys 0.390 real
execute: 1 calls 0.000 user 0.010 sys 1.364 real
fetch_reads: 208647 calls 0.075 user 0.000 sys 0.171 real
fetch_ref: 2048 calls 0.002 user 0.010 sys 0.033 real
fetch_vcf: 2048 calls 0.801 user 0.065 sys 0.915 real
idle: 92 calls 0.003 user 0.002 sys 31.627 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 3.939 user 3.424 sys 8.065 real
overall: 2600738816 mem 9.861 user 11.428 sys 2.736 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory