cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.9s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 2023
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.8s, peak mem 78MB, user 0.0s, sys 0.3s, output queue size 4263
progress 15% @chr15:63911908, elapsed 0.1s, est remaining 0.8s, peak mem 93MB, user 0.1s, sys 0.5s, output queue size 6887
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.7s, peak mem 105MB, user 0.1s, sys 0.7s, output queue size 585
progress 25% @chr16:1945499, elapsed 0.2s, est remaining 0.6s, peak mem 108MB, user 0.1s, sys 0.9s, output queue size 2272
progress 30% @chr16:23510321, elapsed 0.3s, est remaining 0.6s, peak mem 126MB, user 0.1s, sys 1.1s, output queue size 4750
progress 35% @chr16:66578831, elapsed 0.3s, est remaining 0.6s, peak mem 132MB, user 0.2s, sys 1.3s, output queue size 7359
progress 40% @chr16:89286670, elapsed 0.4s, est remaining 0.6s, peak mem 141MB, user 0.2s, sys 1.5s, output queue size 9830
progress 45% @chr17:10306939, elapsed 0.4s, est remaining 0.5s, peak mem 156MB, user 0.3s, sys 1.7s, output queue size 12443
progress 50% @chr17:36331761, elapsed 0.5s, est remaining 0.5s, peak mem 165MB, user 0.3s, sys 1.9s, output queue size 15045
progress 55% @chr17:45102951, elapsed 0.5s, est remaining 0.4s, peak mem 174MB, user 0.3s, sys 2.1s, output queue size 17282
progress 60% @chr17:68421773, elapsed 0.6s, est remaining 0.4s, peak mem 183MB, user 0.4s, sys 2.3s, output queue size 19816
progress 65% @chr18:5890198, elapsed 0.6s, est remaining 0.3s, peak mem 204MB, user 0.4s, sys 2.5s, output queue size 22535
progress 70% @chr18:62550348, elapsed 0.7s, est remaining 0.3s, peak mem 210MB, user 0.4s, sys 2.7s, output queue size 24910
progress 75% @chr19:6934987, elapsed 0.7s, est remaining 0.2s, peak mem 213MB, user 0.5s, sys 2.9s, output queue size 27303
progress 80% @chr19:15264404, elapsed 0.7s, est remaining 0.2s, peak mem 225MB, user 0.5s, sys 3.1s, output queue size 29558
progress 85% @chr19:36949512, elapsed 0.8s, est remaining 0.1s, peak mem 237MB, user 0.5s, sys 3.2s, output queue size 31875
progress 90% @chr19:46481384, elapsed 0.8s, est remaining 0.1s, peak mem 246MB, user 0.6s, sys 3.4s, output queue size 34044
progress 95% @chr20:36916678, elapsed 0.9s, est remaining 0.0s, peak mem 258MB, user 0.6s, sys 3.6s, output queue size 36681
progress 100% @chr20:64031918, elapsed 0.9s, est remaining 0.0s, peak mem 264MB, user 0.6s, sys 3.8s, output queue size 39120
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692776
output file size: 22308
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.002 user 0.014 sys 0.018 real
advance: 49760 calls 0.008 user 0.003 sys 0.023 real
calc: 97912 calls 0.007 user 0.000 sys 0.017 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.010 sys 1.653 real
fetch: 97912 calls 0.000 user 0.000 sys 0.018 real
fetch_ref: 97912 calls 0.120 user 0.077 sys 0.396 real
idle: 39 calls 0.002 user 0.005 sys 21.224 real
init: 1 calls 0.040 user 0.000 sys 0.042 real
region: 97912 calls 0.000 user 0.008 sys 0.020 real
tracker: 97912 calls 0.042 user 0.017 sys 0.087 real
overall: 276959232 mem 1.170 user 5.805 sys 2.773 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory