Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d8a952f0ca9dd66b6d1fc823a69268/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d8a952f0ca9dd66b6d1fc823a69268/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[2026-05-28T05:36:11.779118Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:11.779852Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:11.779864Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:11.779869Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:11.779872Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX68Rr1R'
[2026-05-28T05:36:11.779876Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:11.779882Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:11.779886Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:11.779892Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:11.779896Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:11.779901Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:11.779905Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:11.779908Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:11.779913Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:11.780307Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:11.780413Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:11.786335Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:11.787193Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:11.787360Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:11.787524Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:11.787994Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.788756Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.788853Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.788929Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.789056Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.789269Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.789665Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.789860Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.789995Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.790307Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.790581Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.791326Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.791463Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.791766Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.793411Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.793729Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:11.794284Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.794565Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.794705Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.794770Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.794982Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795084Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795247Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795334Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795452Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795545Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.795909Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796297Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796473Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796547Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796675Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796754Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796895Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.796960Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.797074Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.797152Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.797291Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.797481Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.797919Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798001Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798119Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798182Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798297Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798366Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798472Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798537Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798652Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.798786Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799065Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799463Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799574Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799639Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799752Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799816Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799925Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.799985Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.800096Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.800159Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.800285Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.800350Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.800468Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.800647Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801194Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801262Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801371Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801436Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801545Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801608Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801717Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801781Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801895Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.801958Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.802064Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.802125Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.803950Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.804713Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.804898Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.804976Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805130Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805222Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805372Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805437Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805557Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805623Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.805865Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.806550Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.806739Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.806823Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.806940Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807006Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807124Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807190Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807316Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807396Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807518Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807592Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.807863Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.808570Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.827278Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.827755Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.827834Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828131Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828224Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828326Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828397Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828535Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828605Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:11.828657Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:11.831296Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.833011Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.833773Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.835074Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.838361Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.839510Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-05-28T05:36:11.842022Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-05-28T05:36:11.842655Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.843222Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.845434Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.845653Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-05-28T05:36:11.846323Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.851367Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:11.855083Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-05-28T05:36:11.856885Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-05-28T05:36:11.857980Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-05-28T05:36:11.859269Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-05-28T05:36:11.961975Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.962106Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.963185Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.963619Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.967378Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:11.968584Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-28T05:36:11.996502Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:11.997540Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.000870Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:12.112068Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.113292Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.116415Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-05-28T05:36:12.529161Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.530284Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.533216Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-05-28T05:36:12.945256Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.946314Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.949155Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-05-28T05:36:13.060811Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.062107Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.065175Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-05-28T05:36:13.327012Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.328093Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.330911Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-28T05:36:13.393813Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.394810Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.397686Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-05-28T05:36:13.559374Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.560462Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.563440Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:13.624655Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.625721Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.628370Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-05-28T05:36:13.657680Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.657767Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.659034Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.659273Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.659782Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.664330Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:13.665092Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.665671Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-05-28T05:36:13.667796Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-05-28T05:36:13.729394Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.730442Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.733912Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-05-28T05:36:13.995585Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996616Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999236Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-05-28T05:36:14.028501Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.029437Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.032369Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-28T05:36:14.093726Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.094719Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.098071Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-28T05:36:14.126971Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.128169Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.128474Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.130793Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.131256Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-05-28T05:36:14.133692Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-28T05:36:14.163128Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.164071Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.166966Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:14.196162Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.197153Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.200412Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-28T05:36:14.229471Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.230439Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.233260Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:14.262615Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.263673Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.266812Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-28T05:36:14.279726Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.280668Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.283595Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-28T05:36:14.312953Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.313898Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.316747Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-28T05:36:14.321672Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.322456Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.325264Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-05-28T05:36:14.354527Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.355472Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.358595Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-05-28T05:36:14.520352Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.521293Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.524092Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-05-28T05:36:14.585424Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.586450Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.589174Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-05-28T05:36:14.650485Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.650573Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.651447Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.651713Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.654851Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-28T05:36:14.656158Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-05-28T05:36:14.667846Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.668735Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.671409Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-05-28T05:36:14.700730Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.701961Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.702281Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.704459Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.705001Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-05-28T05:36:14.707590Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-05-28T05:36:14.736529Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.736608Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.737428Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.737704Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.740584Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-28T05:36:14.741270Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-28T05:36:14.770835Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.770940Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.771760Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.772068Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.774850Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-28T05:36:14.775587Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-28T05:36:14.836569Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.836671Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.836714Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.837482Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.837863Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.838222Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.842029Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-05-28T05:36:14.843231Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-05-28T05:36:14.904725Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.905570Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.908249Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-05-28T05:36:14.937609Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.938474Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.941159Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-05-28T05:36:15.102786Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.103605Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.106596Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-05-28T05:36:15.135843Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.136715Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.139361Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-05-28T05:36:15.154711Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:15.168655Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.168745Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.169523Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.169797Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.173270Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-05-28T05:36:15.174327Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-05-28T05:36:15.384946Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.385784Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.389163Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-28T05:36:15.418601Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.419431Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.422370Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-05-28T05:36:15.533902Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.534728Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.537549Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-05-28T05:36:15.566904Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.567771Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.570568Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-28T05:36:15.599799Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.600645Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.603821Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-05-28T05:36:15.915714Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.916486Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.919497Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-05-28T05:36:15.948783Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.949635Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.952394Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:15.981722Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.982555Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.985495Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-05-28T05:36:16.147142Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.147951Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.151211Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-05-28T05:36:16.164154Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.164886Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.167755Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-05-28T05:36:16.180690Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.181338Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.184003Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-05-28T05:36:16.245421Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.245519Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.246256Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.246541Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.249953Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:16.251076Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-05-28T05:36:16.361448Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.362239Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.365206Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-28T05:36:16.426650Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.427414Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.430153Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-05-28T05:36:16.491556Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.492337Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.495305Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:16.556532Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.557241Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.560016Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-28T05:36:16.621431Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.622168Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.625149Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-05-28T05:36:16.686386Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.687138Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.690353Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-05-28T05:36:16.751784Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.752537Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.755634Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-05-28T05:36:16.817067Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.817733Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.820307Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-05-28T05:36:16.881910Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.882001Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.882640Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.883042Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.885939Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-05-28T05:36:16.914818Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-05-28T05:36:16.916034Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.916118Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.916756Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.917027Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.919785Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-05-28T05:36:16.920935Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-28T05:36:16.949226Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.949325Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.949915Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.950378Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.953571Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-28T05:36:16.954376Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:17.015003Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.015696Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.018984Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:17.080468Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.081119Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.084237Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-28T05:36:17.097238Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.097841Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.100783Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:17.114027Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.114587Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.117284Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-05-28T05:36:17.146815Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.146911Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.147470Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.147700Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.150497Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-28T05:36:17.156498Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.157035Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.159956Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-28T05:36:17.177459Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-28T05:36:17.189212Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.189276Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.189306Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.189774Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.190029Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.193061Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-28T05:36:17.194232Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-05-28T05:36:17.223393Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.223477Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.239452Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.239985Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.242730Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-05-28T05:36:17.272142Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.536751Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.537289Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.540341Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-28T05:36:17.601566Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.716013Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.716552Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.719566Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-05-28T05:36:17.780751Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.145465Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.146004Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.148529Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-05-28T05:36:18.210175Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.976062Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.976624Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.979730Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-28T05:36:19.040752Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.041055Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.041232Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.041714Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.042059Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.046405Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:19.047735Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:19.048563Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:19.076368Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.076444Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.076468Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.076699Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.077329Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.080087Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:19.081254Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:19.110899Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.110973Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.111184Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.114341Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:19.143531Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.365166Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:30.668232Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:30.668232Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner]
[2026-05-28T05:36:30.668232Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] workflow version: 2.9.10
[2026-05-28T05:36:30.668307Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner]
[2026-05-28T05:36:30.668314Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:30.668321Z] [nf-a5d8a952f0ca9dd66b6d1fc823a69268-02d89-hksww] [617_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec