[2026-05-28T05:36:17.710627Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:17.711334Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:17.711346Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:17.711350Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:17.711355Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9HPV0q'
[2026-05-28T05:36:17.711359Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:17.711364Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:17.711367Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:17.711371Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:17.711374Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:17.711378Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:17.711382Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:17.711385Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:17.711389Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:17.711781Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:17.711881Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:17.717781Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:17.718581Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:17.718765Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:17.718976Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:17.719153Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.719978Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.720068Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.720581Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.721034Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.721533Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.721626Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.721844Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.721961Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724024Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724279Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724661Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:17.724721Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724805Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724924Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724992Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725103Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725184Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725549Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725743Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725937Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726005Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726116Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726185Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726293Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726357Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726483Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726546Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726656Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726721Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726834Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.726912Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.727057Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.727124Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.727661Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728074Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728232Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728307Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728432Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728527Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728654Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728721Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728834Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728902Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729012Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729079Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729302Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729852Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729969Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730035Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730147Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730215Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730322Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730386Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730504Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730567Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730676Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.730739Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.731110Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.731504Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.731745Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.732260Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.732840Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.732911Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.733022Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.733095Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.733208Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.733271Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.733825Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.733895Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.734203Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.734975Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.735177Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.735255Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.736922Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.737024Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.737532Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738019Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738142Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738210Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738327Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738393Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738508Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738570Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738682Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738750Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738890Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.738960Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.739078Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.739343Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740127Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740235Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740354Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740419Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740563Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740629Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740744Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740808Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.756746Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.757452Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.757562Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.757913Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.757992Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.758094Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.758164Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.758299Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.758644Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:17.759708Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:17.759891Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.760870Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.761361Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.761853Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.762490Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.763239Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.764469Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.765316Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.766672Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.769259Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:17.774436Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:17.777771Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-05-28T05:36:17.778169Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:17.780938Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-05-28T05:36:17.783826Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:17.786172Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-05-28T05:36:17.788297Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:17.852100Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.852209Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.852233Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.853228Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.853675Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.856507Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.857386Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-28T05:36:17.860464Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-28T05:36:17.861564Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-05-28T05:36:17.890097Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.890206Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.891231Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.891528Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.895248Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-05-28T05:36:18.782799Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-05-28T05:36:18.808795Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.810210Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.813552Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:18.842565Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.843941Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.847217Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-05-28T05:36:18.876503Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.877869Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.881345Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-28T05:36:18.942510Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.944015Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.947332Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:19.008642Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.008771Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.009717Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.009985Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.013143Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-05-28T05:36:19.014252Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:19.042345Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.043364Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.046224Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:19.107882Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.108935Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.109562Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.112026Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.112373Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-28T05:36:19.115037Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:19.144619Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.146418Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.146835Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.148597Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.151569Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:19.152609Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:19.180816Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.182414Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.185496Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-05-28T05:36:19.214711Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.216043Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.219101Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-28T05:36:19.248327Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.249596Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.252661Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-05-28T05:36:19.414226Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.415230Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.418102Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:19.479755Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.480788Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.483854Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-05-28T05:36:19.545331Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.546448Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.549571Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:19.861917Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.862983Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.866335Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-05-28T05:36:19.895148Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.896146Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.899187Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-28T05:36:19.903949Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.904744Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.907783Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-05-28T05:36:19.936895Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.937894Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.940959Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-05-28T05:36:20.002315Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.003337Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.006429Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-05-28T05:36:20.268355Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.269719Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.273038Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-28T05:36:20.302018Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.302160Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.303587Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.304069Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.307801Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-05-28T05:36:20.308641Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-05-28T05:36:20.769906Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.771173Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.774033Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:20.835446Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.835566Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.836780Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.837232Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.840107Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-28T05:36:20.840703Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-28T05:36:20.869557Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.870726Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.873456Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-05-28T05:36:20.878547Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.879575Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.881997Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:20.911922Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.912840Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.915722Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-05-28T05:36:20.945398Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.946277Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.949180Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-05-28T05:36:21.161944Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.162880Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.165823Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-05-28T05:36:21.178861Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.180102Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.182846Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-05-28T05:36:21.196101Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.197335Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.199976Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:21.261521Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.262508Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.264827Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.265685Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.266057Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-05-28T05:36:21.268344Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-05-28T05:36:21.297910Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.298751Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.301520Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-05-28T05:36:21.330712Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.331995Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.332339Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.334429Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.335855Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:21.336760Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-05-28T05:36:21.366676Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.367526Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.369570Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.370397Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.370746Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-05-28T05:36:21.373109Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-05-28T05:36:21.434633Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.435453Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.438354Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:21.467692Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.468562Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.471297Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-28T05:36:21.532828Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.532928Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.533684Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.534108Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.537636Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:21.538763Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:21.598999Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.599813Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.602932Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-05-28T05:36:22.165910Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.166699Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.168850Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.169665Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.170029Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-05-28T05:36:22.172427Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-05-28T05:36:22.233926Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.234007Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.234684Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.234955Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.237913Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-28T05:36:22.239136Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-05-28T05:36:22.299533Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.299648Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.300360Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.300733Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.304133Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-05-28T05:36:22.305599Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:22.365490Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.365589Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.366271Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.366584Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.369648Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:22.421274Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-28T05:36:22.431003Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.431121Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.431839Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.432187Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.435219Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-05-28T05:36:22.436401Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:22.697332Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.697449Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.698141Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.698536Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.701717Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-05-28T05:36:22.702797Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-05-28T05:36:22.762946Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.763057Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.763677Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.763950Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.767331Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:22.768096Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-05-28T05:36:23.029576Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.030361Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.033239Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-05-28T05:36:23.033898Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.034580Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.036828Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-28T05:36:23.066641Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.066741Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.067358Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.067670Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.070467Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-05-28T05:36:23.071282Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:23.099759Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.100462Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.103241Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-05-28T05:36:23.132483Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.133184Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.135845Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-05-28T05:36:23.165207Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.165319Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.165916Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.166235Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.168953Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-28T05:36:23.170179Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-05-28T05:36:23.198558Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.199214Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.201858Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-05-28T05:36:23.263392Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.264069Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.267109Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:23.296415Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.297096Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.299721Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-28T05:36:23.328985Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.329646Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.332356Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-05-28T05:36:23.361673Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.362373Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.365087Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-05-28T05:36:23.394294Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.394387Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.394874Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.395201Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.397971Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-28T05:36:23.399167Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-05-28T05:36:23.427452Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.428066Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.430598Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-05-28T05:36:23.492176Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.492284Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.492843Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.495662Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-05-28T05:36:23.557108Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.022577Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.023144Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.026165Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-05-28T05:36:24.055324Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.270100Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.270661Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.273494Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:24.302649Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.567639Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.568188Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.570803Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-05-28T05:36:24.632396Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.947691Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.948232Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.951027Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-05-28T05:36:24.980636Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.245475Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.246014Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:25.248991Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-05-28T05:36:25.278186Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.278903Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.279432Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.282192Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-05-28T05:36:30.344018Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.344378Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.344582Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.344871Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.345090Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.350246Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:30.350435Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:30.376978Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:30.378512Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.378575Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.378599Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.378814Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.379051Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.381597Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:30.382614Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:30.411105Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.411174Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.411369Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:30.413778Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:30.443225Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:36.711507Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:50.830707Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:50.830707Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] 
[2026-05-28T05:36:50.830707Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:50.830789Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] 
[2026-05-28T05:36:50.830797Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:50.830803Z] [nf-82668397b03ee221cdbc17753fb65599-40bb7-ndwqq] [584_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec