Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3c1f70cb4560db99cb7778ab0bdbaa/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/13810229ade520c3d1072b5374a867/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3c1f70cb4560db99cb7778ab0bdbaa/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYoSNFu/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYoSNFu/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYoSNFu/chr19_15162349-15162662.bed.gz.tbi
[2026-05-28T05:36:12.752185Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:12.756692Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:12.756707Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:12.756711Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:12.756715Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXYoSNFu'
[2026-05-28T05:36:12.756719Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:12.756724Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:12.756728Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:12.756731Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-28T05:36:12.756735Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:12.756738Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:12.756742Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:12.756745Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:12.756749Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:12.757271Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:12.757383Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:12.763290Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:12.764058Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:12.764233Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:12.764487Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:12.764778Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765196Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765287Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765361Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765482Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765554Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765678Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765743Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.765891Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.766037Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.766500Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.766742Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.766920Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.767667Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.768266Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.768590Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.770059Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.770635Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:12.770870Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771121Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771348Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771419Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771537Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771607Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771718Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771781Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771905Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.771971Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.772082Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.772322Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.772651Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.772718Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.772854Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.772929Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773082Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773149Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773259Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773323Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773431Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773498Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773624Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.773757Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.774216Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.774281Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.774897Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.774959Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.775072Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.775136Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.775426Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.775557Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.776227Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.776649Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.776778Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.776840Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.776957Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777020Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777137Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777202Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777311Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777379Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777537Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777598Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.777859Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.778291Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.778404Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.778474Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.794213Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.795010Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.795169Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.795433Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.795633Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.796390Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.796691Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.796900Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.797536Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.797796Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.799737Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.800103Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.800826Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.801646Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.801962Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.802942Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.803606Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:12.804851Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:12.805216Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:12.808489Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:12.811821Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-28T05:36:12.815120Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-28T05:36:12.818262Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:12.822198Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-28T05:36:12.825913Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-28T05:36:12.826403Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-28T05:36:12.827075Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:13.743001Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.743862Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.746954Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-28T05:36:13.808295Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.809072Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812203Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-28T05:36:14.224283Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.225123Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.228557Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-28T05:36:14.339947Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.340825Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.344020Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:14.405187Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.405274Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.406043Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.406458Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.409622Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-28T05:36:14.410701Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-28T05:36:14.471183Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.472005Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.474873Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:14.479877Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.480613Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.483991Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-28T05:36:14.513051Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.513829Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.516995Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-28T05:36:14.546142Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.546984Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.549318Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.550146Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.550452Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-28T05:36:14.552852Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-28T05:36:14.815231Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.815323Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.816060Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.816411Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.819643Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-28T05:36:14.820663Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-28T05:36:14.850029Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.850842Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.852828Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.853572Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.853951Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-28T05:36:14.856375Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-28T05:36:14.885478Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.886246Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.889265Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-28T05:36:14.950526Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.951303Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.954264Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:14.983283Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.984059Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.986966Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-28T05:36:15.016191Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.016953Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.020010Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:15.281764Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.282510Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.285531Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:15.314682Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.315447Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.318866Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-28T05:36:15.680886Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.681566Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.684896Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-28T05:36:16.047024Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.047816Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.050527Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-28T05:36:16.079769Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.080449Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.083247Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-28T05:36:16.112483Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.113492Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.114055Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.114125Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.115409Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.117011Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.118132Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-28T05:36:16.120585Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-28T05:36:16.122639Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-28T05:36:16.153989Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.154088Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.154670Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.154973Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.158543Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-28T05:36:16.159723Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:16.320798Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.321508Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.324336Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-28T05:36:16.353455Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.354079Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.357126Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-28T05:36:16.418221Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.418937Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.422037Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-28T05:36:16.683777Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.684477Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.687574Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-28T05:36:17.049701Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.050391Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.053441Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:17.114589Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.115221Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.118035Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-28T05:36:17.147459Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.148045Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.150776Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:17.212213Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.212872Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.215947Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:17.327409Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.328083Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.330980Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-28T05:36:17.360318Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.361005Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.363754Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-28T05:36:17.392973Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.393077Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.393107Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.393659Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.393907Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.394361Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.397710Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-28T05:36:17.398888Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-28T05:36:17.427021Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-28T05:36:17.428000Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.428887Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.429321Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.429409Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.431292Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.431621Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.431936Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-28T05:36:17.434522Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-28T05:36:17.435600Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-28T05:36:17.463831Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.464647Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.464881Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.466785Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.468459Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:17.469496Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-28T05:36:17.499147Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.499722Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.502581Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-28T05:36:17.515580Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.516110Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.519041Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-28T05:36:17.531976Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.532474Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.535296Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-28T05:36:17.564576Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.728944Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729489Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.732428Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-28T05:36:17.793608Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.908059Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.908578Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.911319Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-28T05:36:17.940759Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.155368Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.155886Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.158989Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-28T05:36:18.220026Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.334379Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.334878Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.337882Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-28T05:36:18.366984Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.431071Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.431541Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.434504Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-28T05:36:18.463680Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.678495Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.678993Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.681629Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-28T05:36:18.711022Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.711114Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.711589Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.714108Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-28T05:36:18.743547Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.743852Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.744017Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.744352Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.744780Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.749293Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:18.750405Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:18.776988Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:18.777529Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.777585Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.777609Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.777818Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.778171Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.780865Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:18.781808Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:18.810151Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.813587Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.813806Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.816234Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:18.845875Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.371718Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:31.645049Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:31.645049Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] 
[2026-05-28T05:36:31.645049Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:31.645114Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] 
[2026-05-28T05:36:31.645121Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:31.645128Z] [nf-753c1f70cb4560db99cb7778ab0bdbaa-682f8-lx5mz] [567_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec