Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/02718e86eff8a2d9a131a839cf928e/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/0da2daeadc2db307135a0ee8c830d5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/02718e86eff8a2d9a131a839cf928e/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/0da2daeadc2db307135a0ee8c830d5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXqatwrm/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXqatwrm/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXqatwrm/chr6_138229684-138229952.bed.gz.tbi
[2026-05-28T05:36:13.980705Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:13.981589Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:13.981600Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:13.981604Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:13.981608Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqatwrm'
[2026-05-28T05:36:13.981612Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:13.981616Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:13.981620Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:13.981623Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-05-28T05:36:13.981627Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:13.981631Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:13.981634Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:13.981637Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:13.981641Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:13.982548Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:13.982678Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:13.988503Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:13.989255Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:13.989490Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:13.989730Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:13.990015Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.990595Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.990694Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.990765Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.990893Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.990991Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.991596Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.991784Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.991948Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.992380Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.992833Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.994456Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.995029Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:13.995318Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.995709Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.995942Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996074Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996163Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996282Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996350Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996562Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996645Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996777Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.996850Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.997036Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.997180Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.997599Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.997686Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.997810Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.997893Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998012Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998094Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998257Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998331Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998451Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998524Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998737Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.998962Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999351Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999426Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999542Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999607Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999724Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999791Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999901Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.999970Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.000086Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.000208Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.000375Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.000576Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001040Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001120Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001239Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001324Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001440Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001507Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001626Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001705Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001815Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.001889Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.002028Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.002156Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.002772Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.002848Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.002967Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003040Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003155Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003221Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003469Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003544Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003659Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.003785Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.004009Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.004556Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.005885Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.006051Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.006719Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.006809Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.006936Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007015Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007140Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007217Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007335Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007400Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007512Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007583Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007701Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.007804Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.008107Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.008744Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.008907Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.008983Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009098Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009166Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009284Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009351Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009467Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009535Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009651Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.009737Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.010101Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.010766Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.010895Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.010967Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011086Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011159Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011269Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011340Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011453Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.011520Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.014064Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.014776Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.015064Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.015153Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.030158Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.030545Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.030675Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.030986Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.032022Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.032171Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.032402Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.032821Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.033068Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.033227Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.033602Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.034364Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.034759Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.035512Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:14.035848Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.036414Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:14.037758Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.039510Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.041043Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.043856Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-05-28T05:36:14.046518Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:14.050301Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-05-28T05:36:14.053451Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-05-28T05:36:14.054705Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-05-28T05:36:14.058130Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-05-28T05:36:14.063110Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:14.064657Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:14.178261Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.179406Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.182960Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:14.895914Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.897175Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.901848Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:14.962642Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.962733Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.963872Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.964717Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.967822Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-28T05:36:14.971107Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:15.032008Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.033227Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.037420Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-05-28T05:36:15.050218Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.051366Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.055554Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-05-28T05:36:15.084215Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.085262Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.089606Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-05-28T05:36:15.351178Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.352390Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.355832Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-05-28T05:36:15.467662Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.468960Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.472225Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:15.485143Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.486141Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.490379Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:15.551367Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.551469Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.552552Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.552960Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.556480Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-28T05:36:15.560946Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:15.620221Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.620307Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.621342Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.621644Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.625766Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-05-28T05:36:15.626512Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-05-28T05:36:15.786879Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.788057Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.791597Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-05-28T05:36:15.852764Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.853882Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.857323Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-05-28T05:36:15.918733Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.919879Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.923446Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-05-28T05:36:16.285432Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.287159Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.291248Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:16.402354Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.403889Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.407782Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:16.420959Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.422399Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.425868Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-05-28T05:36:16.988171Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.989706Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.992937Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-05-28T05:36:17.054197Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.055908Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.059148Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:17.170384Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.170495Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.171922Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.172502Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.176284Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-28T05:36:17.177601Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-05-28T05:36:17.237718Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.239391Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.248241Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:17.353869Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.355358Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.358413Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:17.419772Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.421840Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.422420Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.424614Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.426589Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.427584Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-28T05:36:17.430287Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.430756Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-05-28T05:36:17.433244Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-05-28T05:36:17.438154Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.439437Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.443167Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-28T05:36:17.504085Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.504177Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.504219Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.504245Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.505618Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.506380Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.507028Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.509696Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.510061Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-05-28T05:36:17.515678Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-05-28T05:36:17.515940Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:17.576104Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.577152Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.581679Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:17.586088Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-05-28T05:36:17.594848Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.596156Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.599961Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-28T05:36:17.661233Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.661354Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.662605Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.663195Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.667294Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-28T05:36:17.668127Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-05-28T05:36:17.696130Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.697450Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.701215Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-28T05:36:17.705795Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.705848Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.706897Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.707248Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.710623Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-05-28T05:36:17.711862Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:17.739652Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.739775Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.740861Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.741251Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.744898Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-05-28T05:36:17.746119Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-05-28T05:36:17.749394Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.750410Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.753696Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-05-28T05:36:17.782502Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.782625Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.782659Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.783825Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.784173Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.784456Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.789601Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-28T05:36:17.791231Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:17.792493Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:17.795405Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.796406Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.799537Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-05-28T05:36:17.828601Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.829967Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.833796Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:17.863039Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.864172Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.867954Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-28T05:36:17.929235Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.930380Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.934280Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-05-28T05:36:17.995567Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.996686Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.000720Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-05-28T05:36:18.061666Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.062895Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.066493Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:18.178109Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.179410Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.183013Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-05-28T05:36:18.244632Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.245867Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.249359Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-28T05:36:18.310547Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.311619Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.315172Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-05-28T05:36:18.376552Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.377709Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.381128Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-05-28T05:36:18.442506Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.443566Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.447478Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-05-28T05:36:18.508746Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.509872Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.514076Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:18.625199Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.626314Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.630551Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:18.691774Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.692990Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.696706Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-28T05:36:18.757619Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.758882Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.763032Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-05-28T05:36:18.874105Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.875262Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.879637Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-05-28T05:36:18.940724Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.941921Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.945935Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:19.308158Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.309328Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.312900Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-28T05:36:19.374170Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.375222Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.379335Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:19.641111Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.642082Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.646092Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-28T05:36:19.674911Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.676140Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.680399Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-05-28T05:36:19.684911Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.685853Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.689694Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-05-28T05:36:19.750466Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.751257Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.755500Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:19.866500Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.866632Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.867596Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.868006Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.871929Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-05-28T05:36:19.873232Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-05-28T05:36:19.933343Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.934406Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.938246Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:20.200720Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.201668Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.205448Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-28T05:36:20.266565Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.266693Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.267540Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.267907Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.271508Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-05-28T05:36:20.272744Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:20.332715Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.332814Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.333738Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.334182Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.337914Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-05-28T05:36:20.339097Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-05-28T05:36:20.399301Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.400179Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.403754Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-05-28T05:36:20.766221Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.767248Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.770899Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-05-28T05:36:20.800295Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.801218Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.805264Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-05-28T05:36:20.817813Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.818732Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.822239Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-28T05:36:20.883178Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.884177Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.887522Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-28T05:36:20.949117Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.950022Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.953769Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-28T05:36:21.015024Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.015896Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.019370Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-05-28T05:36:21.081084Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.081986Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.085751Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-28T05:36:21.146927Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.147777Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.151562Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-28T05:36:21.212766Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.213659Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.217488Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:21.230118Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.230936Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.235171Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-05-28T05:36:21.296303Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.297218Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.300884Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:21.362468Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.363324Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.367436Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-05-28T05:36:21.396499Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.397348Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.401221Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-05-28T05:36:21.401973Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.402622Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.405516Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-05-28T05:36:21.467128Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.467231Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.467997Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.468380Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.472227Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-28T05:36:21.473298Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:21.533626Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.533738Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.534455Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.534838Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.538162Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-28T05:36:21.539264Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-28T05:36:21.599459Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.599544Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.600200Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.600567Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.604585Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-28T05:36:21.605726Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-28T05:36:21.667785Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.667895Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.832783Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.833531Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.837221Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-05-28T05:36:21.898509Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.114105Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.114831Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.118442Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-28T05:36:22.179602Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.444804Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.445497Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.449331Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-05-28T05:36:22.510156Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.542394Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.543027Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.546452Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-05-28T05:36:22.608108Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.722813Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.723518Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.726542Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-05-28T05:36:22.788046Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.504437Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.505259Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.508778Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-28T05:36:23.569664Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.570034Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.570206Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.570684Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.571071Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.574635Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:23.577789Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:23.578772Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:23.607040Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.607112Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.607137Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.607368Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.607715Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.610808Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:23.611783Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:23.672430Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.672520Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.672811Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.676011Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:23.705844Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.622516Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:32.870427Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:32.870427Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] 
[2026-05-28T05:36:32.870427Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:32.870505Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] 
[2026-05-28T05:36:32.870513Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:32.870519Z] [nf-d00da2daeadc2db307135a0ee8c830d5-db6e2-gcdm4] [605_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec