cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.1s, est remaining 1.1s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 170
progress 10% @chr2:19978751, elapsed 0.1s, est remaining 1.0s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 235
progress 15% @chr2:189034070, elapsed 0.2s, est remaining 1.0s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 442
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.9s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 1384
progress 25% @chr4:88440148, elapsed 0.3s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 7794
progress 30% @chr5:147383890, elapsed 0.3s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 8031
progress 35% @chr6:127143030, elapsed 0.4s, est remaining 0.7s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 17985
progress 40% @chr7:128835326, elapsed 0.4s, est remaining 0.7s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 4372
progress 45% @chr9:893912, elapsed 0.5s, est remaining 0.6s, peak mem 278MB, user 0.0s, sys 0.1s, output queue size 13724
progress 50% @chr10:32346763, elapsed 0.6s, est remaining 0.6s, peak mem 287MB, user 0.0s, sys 0.1s, output queue size 23671
progress 55% @chr11:48263861, elapsed 0.6s, est remaining 0.5s, peak mem 296MB, user 0.0s, sys 0.1s, output queue size 34132
progress 60% @chr12:21910157, elapsed 0.7s, est remaining 0.4s, peak mem 296MB, user 0.0s, sys 0.1s, output queue size 43686
progress 65% @chr13:49207081, elapsed 0.7s, est remaining 0.4s, peak mem 299MB, user 0.0s, sys 0.1s, output queue size 8361
progress 70% @chr15:42674827, elapsed 0.8s, est remaining 0.3s, peak mem 299MB, user 0.0s, sys 0.1s, output queue size 18398
progress 75% @chr16:30928467, elapsed 0.8s, est remaining 0.3s, peak mem 299MB, user 0.0s, sys 0.1s, output queue size 27963
progress 80% @chr17:42507520, elapsed 0.9s, est remaining 0.2s, peak mem 299MB, user 0.0s, sys 0.1s, output queue size 38652
progress 85% @chr19:5654061, elapsed 1.0s, est remaining 0.2s, peak mem 326MB, user 0.0s, sys 0.1s, output queue size 49063
progress 90% @chr19:55788807, elapsed 1.0s, est remaining 0.1s, peak mem 326MB, user 0.0s, sys 0.1s, output queue size 58565
progress 95% @chr22:36991481, elapsed 1.5s, est remaining 0.1s, peak mem 2492MB, user 5.7s, sys 5.5s, output queue size 3249
progress 100% @chrY:56960392, elapsed 1.5s, est remaining 0.0s, peak mem 2492MB, user 5.9s, sys 5.5s, output queue size 5230
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290615
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.738 user 0.114 sys 2.224 real
done: 1 calls 0.329 user 0.228 sys 0.557 real
execute: 1 calls 0.005 user 0.002 sys 1.552 real
fetch_reads: 208647 calls 0.072 user 0.000 sys 0.196 real
fetch_ref: 2072 calls 0.017 user 0.010 sys 0.057 real
fetch_vcf: 2072 calls 0.729 user 0.059 sys 0.909 real
idle: 92 calls 0.002 user 0.002 sys 31.697 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.093 user 5.246 sys 9.877 real
overall: 2614067200 mem 9.843 user 22.337 sys 2.971 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory