File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/b754203574f3ef41aed946c6d0d6fe/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-28T05:36:16.066753Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:16.067612Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:16.067623Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:16.067627Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:16.067632Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXrYFjSe'
[2026-05-28T05:36:16.067636Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:16.067641Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:16.067644Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:16.067648Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-05-28T05:36:16.067652Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:16.067656Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:16.067659Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:16.067663Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:16.067667Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:16.068165Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:16.068303Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:16.074252Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:16.075113Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:16.075731Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:16.076073Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:16.076398Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.076720Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.076816Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.076892Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077014Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077083Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077207Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077271Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077391Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077473Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.077900Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.078189Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.078284Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.078926Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.079408Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.079746Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.079905Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.082639Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.083007Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.083467Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.083844Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:16.083951Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084095Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084169Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084281Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084347Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084468Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084533Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084659Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084732Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.084955Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.085342Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086016Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086329Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086451Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086518Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086634Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086702Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086818Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.086889Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.087007Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.087072Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.087187Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.087251Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.088103Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.088563Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.088718Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.088864Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.088982Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089047Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089155Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089219Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089333Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089396Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089508Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089607Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.089977Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090379Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090493Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090559Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090671Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090736Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090850Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.090914Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.091023Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.091091Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.091198Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.091259Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.106162Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.106295Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.106369Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.106541Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.106609Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.106698Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.108197Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.108519Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.109367Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:16.109456Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:16.115371Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.116022Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.116311Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.117071Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.117696Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.118383Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.119734Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.120577Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.121549Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.124951Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:16.127593Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:16.131030Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:16.133604Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:16.139159Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:16.140057Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:16.141608Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:16.143105Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:16.241799Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.242707Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.248612Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:16.960810Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.961692Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.965246Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:17.377340Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.378211Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.382305Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:18.446329Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.446441Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.447245Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.447637Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.452133Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:18.452890Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:18.463976Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.464798Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.467769Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:18.481412Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.482177Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.485202Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:18.514498Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.515287Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.518183Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:18.579747Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.580562Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.583842Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:18.645082Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.645939Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.649150Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:18.760562Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.761449Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.764480Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:18.826033Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.826843Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.830499Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:18.891168Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.891276Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.892034Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.892436Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.896243Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:18.897436Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:19.158035Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.158986Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.162574Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:19.223742Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.224541Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.227989Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:19.288927Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.289752Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.293493Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:19.404421Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.405316Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.409173Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:19.470154Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.470969Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.474353Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:19.535734Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.536537Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.539888Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:19.801891Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.802721Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.806107Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:20.419012Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.419801Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.423564Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:20.785535Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.786352Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.790889Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:21.152483Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.153203Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.156601Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:21.217803Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.218540Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.221923Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:21.283445Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.284210Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.287303Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:21.348505Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.349658Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.353727Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:21.366315Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.367368Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.370388Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:21.431618Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.431705Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.432388Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.432929Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.436516Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:21.437791Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:21.465837Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.466550Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.469733Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:21.470633Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.471143Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.474426Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:21.503774Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.504444Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.507619Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:21.512524Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.513131Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.515998Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:21.545087Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.545745Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.548874Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:21.549710Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.550270Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.553277Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:21.566204Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.566828Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.569705Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:21.582889Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.583503Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.586362Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:21.587062Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.587546Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.590291Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:21.603439Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.604027Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.607307Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:21.620421Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.621068Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.623312Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.623979Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.624489Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:21.626964Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:21.627868Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.628345Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.631482Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:21.660709Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.660805Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.661346Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.661643Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.665023Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:21.699117Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:21.726182Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.726285Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.726820Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.727313Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.731049Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:21.732761Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:21.792110Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.792679Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.796207Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:21.857438Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.858055Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.861869Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:21.972904Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.973541Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.977030Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:22.038210Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.038918Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.042596Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:22.104280Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.104870Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.107804Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:22.169118Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.233422Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.233930Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.237509Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:22.298401Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.268110Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.268853Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.272380Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:23.333092Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.334679Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.335087Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.338016Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:23.399155Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.513582Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.514072Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.517435Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:23.578517Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.578605Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.579181Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.582229Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:23.611245Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.725384Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.725818Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.729061Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:23.758124Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.758583Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.760796Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.761983Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:23.792742Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.792973Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.793111Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.793879Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.794606Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.801731Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:23.803578Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:23.804744Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:23.828395Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.828839Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.832932Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:23.833449Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.833507Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.833703Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.836539Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:23.865634Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.865716Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.865936Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:23.869092Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:23.897872Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:26.668833Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:34.956064Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:34.956064Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] 
[2026-05-28T05:36:34.956064Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:34.956149Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] 
[2026-05-28T05:36:34.956158Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:34.956166Z] [nf-2fb754203574f3ef41aed946c6d0d6fe-37f1a-rncz9] [584_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec