File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/4fd19d4e38d78cda2a8089526c191f/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-28T05:36:13.802100Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-28T05:36:13.802869Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-28T05:36:13.802883Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-28T05:36:13.802887Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-28T05:36:13.802891Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdApa3n'
[2026-05-28T05:36:13.802895Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-28T05:36:13.802900Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-28T05:36:13.802910Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-28T05:36:13.802921Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-05-28T05:36:13.802927Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-28T05:36:13.802930Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-28T05:36:13.802934Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-28T05:36:13.802938Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-28T05:36:13.802942Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-28T05:36:13.803601Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-28T05:36:13.803717Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-28T05:36:13.809576Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-28T05:36:13.810388Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-28T05:36:13.810733Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-28T05:36:13.810924Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-28T05:36:13.811166Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.811480Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.811567Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.811638Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.811755Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.811821Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.811938Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812000Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812112Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812173Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812305Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.812526Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.813047Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.813259Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.813742Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.815275Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.815760Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.816270Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-28T05:36:13.816934Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817115Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817567Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817640Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817755Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817824Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817935Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.817998Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818117Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818181Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818293Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818361Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.818540Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.819011Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.819692Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.819808Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.819947Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.820024Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.820754Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821151Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821315Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821387Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821507Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821604Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821740Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.821816Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.822472Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.822841Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.822963Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823102Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823225Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823295Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823407Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823485Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823613Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823678Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823794Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.823872Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.824200Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.824657Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.824792Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.824869Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.824987Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825056Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825166Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825237Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825345Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825416Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825532Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.825601Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.841664Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.842058Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.842144Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.842310Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.842393Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.842493Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.843707Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.844619Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.844873Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-28T05:36:13.845076Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-28T05:36:13.845705Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.846476Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.847046Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.847549Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.848839Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.849978Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.852603Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.856931Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:13.860870Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:13.861858Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.864584Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:13.865061Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:13.868772Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:13.869080Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:13.872091Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:13.877028Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:13.878706Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:14.587946Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.588845Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:14.592290Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:15.104537Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.105338Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.108842Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:15.169920Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.170758Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.174101Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:15.486218Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.487075Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:15.490764Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:16.254237Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.255366Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.258518Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-28T05:36:16.319663Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.320847Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.324103Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:16.385291Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.386452Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.389917Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:16.451008Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.452129Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.455201Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-28T05:36:16.516369Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.517644Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.520964Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:16.832862Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.833949Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.837325Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:16.948797Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.949813Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.953157Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-28T05:36:16.982017Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.983090Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.986260Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-28T05:36:16.991004Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.991077Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.991932Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.992462Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:16.996287Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-28T05:36:16.998078Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:17.057265Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.057373Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.057435Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.058336Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.058852Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.059410Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.063331Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-28T05:36:17.064492Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-28T05:36:17.066356Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:17.125465Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.125594Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.126539Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.127017Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.130681Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-28T05:36:17.131878Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:17.135235Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.136100Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.139267Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-28T05:36:17.168120Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.169334Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.173107Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:17.173675Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.174502Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.182100Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:17.206620Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.207534Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.210937Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-28T05:36:17.272222Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.273011Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.276210Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-28T05:36:17.337214Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.337988Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.341608Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:17.653075Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.653161Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.653187Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.653207Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.653834Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.654323Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.654734Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.655722Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.660257Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-28T05:36:17.660731Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-28T05:36:17.663806Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:17.664814Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:17.724142Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.724244Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725026Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.725698Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.729693Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-28T05:36:17.763740Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-28T05:36:17.790699Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.790783Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.791436Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.792196Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:17.795631Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:17.796792Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:18.107604Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.108290Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.111676Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-28T05:36:18.172805Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.173508Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.177024Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-28T05:36:18.237691Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.237768Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.238360Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.239128Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.243186Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:18.244315Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:18.303970Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.304663Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.308078Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-28T05:36:18.369121Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.369793Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:18.373976Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:19.286656Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.287217Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.290505Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:19.401853Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.402794Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.406796Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-28T05:36:19.467027Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.467836Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.471336Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-28T05:36:19.532446Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.533141Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.536982Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-28T05:36:19.565533Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.566303Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.570292Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-28T05:36:19.570647Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.570726Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.571354Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.571787Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.575323Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-28T05:36:19.576912Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-28T05:36:19.636672Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.636783Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.636821Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.637567Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.638046Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.638581Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.644234Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:19.645913Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:19.646863Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:19.953838Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.954796Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-28T05:36:19.957777Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-28T05:36:20.019238Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.020102Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.020689Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.021827Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.025497Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:20.186639Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.187350Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.191026Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-28T05:36:20.252051Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.252142Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.252784Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.255779Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-28T05:36:20.317008Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.682177Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.682696Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-28T05:36:20.686312Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-28T05:36:20.747318Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.463748Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.464270Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.467325Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-28T05:36:21.528826Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.844245Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.844737Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-28T05:36:21.848064Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-28T05:36:21.909618Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.137876Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-28T05:36:22.174480Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.174567Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.174969Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.178134Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-28T05:36:22.239023Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.704294Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.704769Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.707525Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-28T05:36:22.769015Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.769310Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.769468Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.770100Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.770757Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.774950Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-28T05:36:22.776318Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-28T05:36:22.777459Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-28T05:36:22.803809Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.803940Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.804355Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.804674Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.805002Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.807939Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-28T05:36:22.808888Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-28T05:36:22.869409Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.869538Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.869829Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-28T05:36:22.872858Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-28T05:36:22.902081Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-28T05:36:24.419260Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-28T05:36:32.691731Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-28T05:36:32.691731Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] 
[2026-05-28T05:36:32.691731Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-28T05:36:32.691791Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] 
[2026-05-28T05:36:32.691798Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-28T05:36:32.691806Z] [nf-774fd19d4e38d78cda2a8089526c191f-a4d07-qb7b4] [614_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec