Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/937c06b4b92062d3471d1a4e8d9b65/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/b186de2e5cbbf9c279145e15d3cbe8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/b186de2e5cbbf9c279145e15d3cbe8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/937c06b4b92062d3471d1a4e8d9b65/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/142f3531a04ccc39ba104e41a8b442/germline_control_1.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/142f3531a04ccc39ba104e41a8b442/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Writing to /tmp/bcftools.qEjJgZ
Checking the headers and starting positions of 2 files
Merging 1 temporary files
Done
Cleaning