Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/11663a86573f63438a8e925e4816d0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0b3dcb3638939686c3bfe5522d719/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/c7e2e5656d77fcfbc7cd4b05476830/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/c7e2e5656d77fcfbc7cd4b05476830/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-b_pprvd6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-28 05:40:08,368 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-28 05:40:09,242 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-28 05:40:09,420 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-28 05:40:10,535 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-28 05:40:10,737 - cnv_pipe.batch.run_model - INFO - Processing cluster 651 with 190 probes
2026-05-28 05:40:11,149 - cnv_pipe.batch.run_model.cluster651 - INFO - Child process started for cluster 651 with 190 probes
2026-05-28 05:41:10,637 - cnv_pipe.batch.run_model.cluster651 - INFO - Child process finished cluster 651. Wrote cluster_651_samples.csv and cluster_651_params.csv
2026-05-28 05:41:10,638 - cnv_pipe.batch.run_model - INFO - Cluster 651 finished in 59.90 seconds. Status: SUCCESS