cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:210000001, elapsed 0.0s, est remaining 0.7s, peak mem 288MB, user 0.1s, sys 1.2s, output queue size 120
progress 10% @chr1:94000001, elapsed 0.1s, est remaining 0.6s, peak mem 288MB, user 0.3s, sys 3.1s, output queue size 281
progress 15% @chr3:90000001, elapsed 0.1s, est remaining 0.5s, peak mem 288MB, user 0.4s, sys 5.5s, output queue size 180
progress 20% @chr4:31000001, elapsed 0.1s, est remaining 0.4s, peak mem 288MB, user 0.4s, sys 6.6s, output queue size 342
progress 25% @chr4:20000001, elapsed 0.1s, est remaining 0.4s, peak mem 288MB, user 0.5s, sys 8.1s, output queue size 503
progress 30% @chr5:146000001, elapsed 0.2s, est remaining 0.4s, peak mem 288MB, user 0.5s, sys 10.1s, output queue size 664
progress 35% @chr6:135000001, elapsed 0.2s, est remaining 0.3s, peak mem 288MB, user 0.6s, sys 12.5s, output queue size 825
progress 40% @chr7:118000001, elapsed 0.2s, est remaining 0.3s, peak mem 288MB, user 0.7s, sys 14.6s, output queue size 986
progress 45% @chr7:39000001, elapsed 0.2s, est remaining 0.3s, peak mem 288MB, user 0.8s, sys 17.3s, output queue size 1147
progress 50% @chr9:137000001, elapsed 0.3s, est remaining 0.3s, peak mem 288MB, user 0.8s, sys 19.0s, output queue size 1310
progress 55% @chr11:24000001, elapsed 0.3s, est remaining 0.2s, peak mem 288MB, user 0.9s, sys 20.5s, output queue size 1471
progress 60% @chr12:44000001, elapsed 0.3s, est remaining 0.2s, peak mem 288MB, user 0.9s, sys 22.3s, output queue size 1633
progress 65% @chr13:80000001, elapsed 0.3s, est remaining 0.2s, peak mem 288MB, user 1.1s, sys 23.9s, output queue size 1794
progress 70% @chr15:14000001, elapsed 0.4s, est remaining 0.2s, peak mem 288MB, user 1.1s, sys 26.3s, output queue size 1957
progress 75% @chr16:77000001, elapsed 0.4s, est remaining 0.1s, peak mem 288MB, user 1.2s, sys 28.5s, output queue size 810
progress 80% @chr18:65000001, elapsed 0.4s, est remaining 0.1s, peak mem 288MB, user 1.3s, sys 30.4s, output queue size 972
progress 85% @chr15:50000001, elapsed 0.4s, est remaining 0.1s, peak mem 288MB, user 1.4s, sys 33.0s, output queue size 1133
progress 90% @chrX:85000001, elapsed 0.4s, est remaining 0.0s, peak mem 288MB, user 1.6s, sys 35.1s, output queue size 1295
progress 95% @chr6_GL000250v2_alt:4000001, elapsed 0.5s, est remaining 0.0s, peak mem 288MB, user 1.7s, sys 37.5s, output queue size 1640
progress 100% @HLA-DQA1*01:01:02:1, elapsed 0.6s, est remaining 0.0s, peak mem 288MB, user 1.9s, sys 42.9s, output queue size 4881
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000606a6
features: 1f8bfbff fffa320b
extended: f1bf07ab 00407f5a
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.014 real
"predict_filter": 171 calls 0.009 user 0.003 sys 0.019 real
advance: 3219322 calls 0.450 user 18.245 sys 20.264 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.004 sys 0.662 real
fetch_ref: 460 calls 0.001 user 0.023 sys 0.284 real
idle: 19865 calls 0.600 user 0.566 sys 220.504 real
init: 1 calls 0.180 user 0.082 sys 0.696 real
overall: 302415872 mem 2.924 user 45.749 sys 2.389 real