cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.1s, est remaining 1.2s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2433
progress 10% @chr2:19937743, elapsed 0.1s, est remaining 1.1s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 8163
progress 15% @chr2:189008035, elapsed 0.2s, est remaining 1.1s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 165
progress 20% @chr3:97871842, elapsed 0.3s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 10643
progress 25% @chr4:88404876, elapsed 0.3s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 20896
progress 30% @chr5:146878002, elapsed 0.4s, est remaining 0.9s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 30933
progress 35% @chr6:127119291, elapsed 0.4s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 40919
progress 40% @chr7:128807360, elapsed 0.5s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 50375
progress 45% @chr9:977002, elapsed 0.6s, est remaining 0.7s, peak mem 280MB, user 0.0s, sys 0.1s, output queue size 59730
progress 50% @chr10:32543300, elapsed 0.6s, est remaining 0.6s, peak mem 289MB, user 0.0s, sys 0.1s, output queue size 69680
progress 55% @chr11:48263861, elapsed 0.7s, est remaining 0.6s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 80145
progress 60% @chr12:21818150, elapsed 0.7s, est remaining 0.5s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 89692
progress 65% @chr13:49006191, elapsed 0.8s, est remaining 0.4s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 100744
progress 70% @chr15:42448072, elapsed 0.9s, est remaining 0.4s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 110781
progress 75% @chr16:30964612, elapsed 1.0s, est remaining 0.3s, peak mem 307MB, user 0.0s, sys 0.1s, output queue size 611
progress 80% @chr17:42404687, elapsed 1.0s, est remaining 0.3s, peak mem 307MB, user 0.0s, sys 0.1s, output queue size 11296
progress 85% @chr19:5648989, elapsed 1.1s, est remaining 0.2s, peak mem 334MB, user 0.0s, sys 0.1s, output queue size 21706
progress 90% @chr19:55678527, elapsed 1.1s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.1s, output queue size 31203
progress 95% @chr22:36937342, elapsed 1.7s, est remaining 0.1s, peak mem 2494MB, user 5.7s, sys 7.3s, output queue size 3225
progress 100% @chr6_GL000254v2_alt:3876745, elapsed 1.7s, est remaining 0.0s, peak mem 2497MB, user 5.8s, sys 7.3s, output queue size 4792
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290598
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.693 user 0.178 sys 2.268 real
done: 1 calls 0.348 user 0.284 sys 0.634 real
execute: 1 calls 0.002 user 0.011 sys 1.720 real
fetch_reads: 208647 calls 0.066 user 0.008 sys 0.194 real
fetch_ref: 2072 calls 0.005 user 0.017 sys 0.039 real
fetch_vcf: 2072 calls 0.861 user 0.056 sys 0.887 real
idle: 92 calls 0.001 user 0.003 sys 31.614 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.002 user 7.007 sys 11.582 real
overall: 2619170816 mem 9.956 user 28.841 sys 3.119 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory