File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/68a5fefe693321d640ac8c8e7aaef0/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-01T21:51:46.013369Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:46.014229Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:46.014249Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:46.014256Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:46.014263Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXysNDaE'
[2026-06-01T21:51:46.014270Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:46.014277Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:46.014283Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:46.014289Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] memMb: 1015785
[2026-06-01T21:51:46.014295Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:46.014301Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:46.014306Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:46.014312Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:46.014318Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:46.014903Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:46.014967Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:46.022792Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:46.023592Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:46.023869Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:46.024136Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:46.024406Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.025334Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.025671Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.026004Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.026265Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.027086Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.028843Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029237Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029357Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029592Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:46.029720Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029814Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030004Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030179Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030337Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030502Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.031079Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.031326Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.031664Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032035Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032309Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032411Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032570Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032666Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032821Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.032907Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034126Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034240Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034396Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034488Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034677Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034811Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035176Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035607Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035789Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035882Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036037Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036125Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036277Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036362Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036514Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037101Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037469Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037562Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037732Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037827Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037987Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038172Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038356Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038602Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039246Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039345Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039495Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039582Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039761Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039858Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040011Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040103Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040914Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.041358Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.041554Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.041645Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.041819Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.041922Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.058584Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.058766Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.058869Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059102Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059201Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059321Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059445Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059622Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059725Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.059807Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:46.063769Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.065048Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.065673Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.066442Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.068688Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.068894Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-01T21:51:46.069808Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.071043Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.072100Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.074403Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.078040Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-01T21:51:46.082503Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-01T21:51:46.083530Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-01T21:51:46.087916Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-01T21:51:46.091369Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-01T21:51:46.091493Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-01T21:51:46.092633Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-01T21:51:46.192444Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.192538Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.192567Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.193469Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.193753Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.194197Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.199706Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-01T21:51:46.202807Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-01T21:51:46.204254Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-01T21:51:46.262182Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.263148Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.268093Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-01T21:51:46.296579Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.296665Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.297562Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.300253Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.301256Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-01T21:51:46.304266Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-01T21:51:46.867169Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.868143Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.871496Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-01T21:51:46.932878Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.933967Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.937312Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-01T21:51:47.349368Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.350323Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.353618Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-01T21:51:47.416158Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.417128Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.420796Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-01T21:51:47.582202Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.583834Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.587568Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-01T21:51:47.600194Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.601679Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.605117Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-01T21:51:47.606009Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.607410Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.610826Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-01T21:51:47.623559Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.625220Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.628398Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-01T21:51:47.657453Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.658899Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.662284Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-01T21:51:47.773575Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.775089Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.778586Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-01T21:51:47.889746Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.889881Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.891219Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.891539Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.894954Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-01T21:51:47.896594Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:51:47.955899Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.957378Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.960926Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-01T21:51:47.965526Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.966824Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.970196Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:51:48.031116Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.031233Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.032597Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.033201Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.037349Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-01T21:51:48.037694Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-01T21:51:48.097755Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.099122Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.102213Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-01T21:51:48.163446Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.164769Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.168292Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-01T21:51:48.329413Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.331008Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.334307Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-01T21:51:48.395429Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.396780Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.400339Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-01T21:51:48.412990Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.414248Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.417899Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-01T21:51:48.446831Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.448093Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.451480Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-01T21:51:48.512546Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.512672Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.513820Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.514305Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.518510Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-01T21:51:48.519507Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-01T21:51:49.982893Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.983698Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.986977Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-01T21:51:50.048404Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.048521Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.049256Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.049888Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.053453Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-01T21:51:50.054147Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-01T21:51:50.116628Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.116743Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.116780Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.117460Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.118012Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.120364Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.120740Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-01T21:51:50.123266Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-01T21:51:50.124290Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-01T21:51:50.186043Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.186114Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.186155Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.186794Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.187446Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.188121Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.191830Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-01T21:51:50.192793Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-01T21:51:50.194076Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-01T21:51:50.254080Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.254200Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.254851Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.255517Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.259022Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-01T21:51:50.259880Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-01T21:51:50.265965Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.266591Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.269978Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-01T21:51:50.299055Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.299126Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.299710Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.300119Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.303627Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-01T21:51:50.305159Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-01T21:51:50.365065Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.365158Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.365193Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.365787Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.366390Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.367033Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.369787Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-01T21:51:50.372686Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-01T21:51:50.433699Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.434358Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.437504Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-01T21:51:50.466559Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.467573Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.470476Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:51:50.483589Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.484549Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.487775Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-01T21:51:50.516760Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.524987Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.694767Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-01T21:51:50.739982Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.740070Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.740100Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.740138Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.740651Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.742497Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.743314Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.743539Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-01T21:51:50.746734Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-01T21:51:50.747853Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-01T21:51:50.777498Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.785387Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.785458Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.201141Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.201731Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.204668Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-01T21:51:51.266212Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.781768Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.782297Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.784861Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-01T21:51:51.846613Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.846929Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.847103Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.847603Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.848367Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.852114Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:51.853297Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:51.854306Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:51.912516Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.912601Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.912631Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.912918Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.913250Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.916223Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:51.945765Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:51.977858Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.977949Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.978233Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.980790Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:52.010509Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:56.634117Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:04.902853Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:04.902853Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] 
[2026-06-01T21:52:04.902853Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:04.902925Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] 
[2026-06-01T21:52:04.902934Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:04.902943Z] [nf-b268a5fefe693321d640ac8c8e7aaef0-ed657-rwk8x] [572_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec