cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18376800, elapsed 0.1s, est remaining 1.2s, peak mem 88MB, user 0.0s, sys 0.2s, output queue size 2406
progress 10% @chr1:37761367, elapsed 0.2s, est remaining 1.7s, peak mem 99MB, user 0.1s, sys 0.4s, output queue size 2067
progress 15% @chr1:65411250, elapsed 0.3s, est remaining 1.7s, peak mem 111MB, user 0.2s, sys 0.6s, output queue size 4794
progress 20% @chr1:113837590, elapsed 0.4s, est remaining 1.5s, peak mem 119MB, user 0.2s, sys 0.8s, output queue size 7555
progress 25% @chr1:155248405, elapsed 0.4s, est remaining 1.3s, peak mem 126MB, user 0.3s, sys 0.9s, output queue size 9898
progress 30% @chr1:179102287, elapsed 0.5s, est remaining 1.2s, peak mem 133MB, user 0.3s, sys 1.0s, output queue size 12370
progress 35% @chr1:209838909, elapsed 0.6s, est remaining 1.1s, peak mem 143MB, user 0.4s, sys 1.2s, output queue size 14808
progress 40% @chr1:246986967, elapsed 0.7s, est remaining 1.0s, peak mem 152MB, user 0.4s, sys 1.4s, output queue size 17207
progress 45% @chr2:32812504, elapsed 0.7s, est remaining 0.9s, peak mem 162MB, user 0.5s, sys 1.6s, output queue size 19522
progress 50% @chr2:74459873, elapsed 0.8s, est remaining 0.8s, peak mem 172MB, user 0.5s, sys 1.9s, output queue size 21987
progress 55% @chr2:113499257, elapsed 0.8s, est remaining 0.7s, peak mem 185MB, user 0.6s, sys 2.3s, output queue size 24511
progress 60% @chr2:170997712, elapsed 0.9s, est remaining 0.6s, peak mem 195MB, user 0.6s, sys 2.5s, output queue size 27211
progress 65% @chr2:202788830, elapsed 1.0s, est remaining 0.5s, peak mem 203MB, user 0.7s, sys 2.7s, output queue size 29485
progress 70% @chr2:233770694, elapsed 1.0s, est remaining 0.4s, peak mem 213MB, user 0.7s, sys 3.0s, output queue size 31966
progress 75% @chr3:25623515, elapsed 1.1s, est remaining 0.4s, peak mem 222MB, user 0.7s, sys 3.3s, output queue size 34184
progress 80% @chr3:49813249, elapsed 1.2s, est remaining 0.3s, peak mem 231MB, user 0.8s, sys 3.6s, output queue size 36677
progress 85% @chr3:101859272, elapsed 1.2s, est remaining 0.2s, peak mem 243MB, user 0.8s, sys 3.8s, output queue size 1226
progress 90% @chr3:139539460, elapsed 1.3s, est remaining 0.1s, peak mem 254MB, user 0.8s, sys 4.1s, output queue size 3824
progress 95% @chr3:188239635, elapsed 1.4s, est remaining 0.1s, peak mem 264MB, user 0.9s, sys 4.3s, output queue size 6236
progress 100% @chr4:9243879, elapsed 1.4s, est remaining 0.0s, peak mem 273MB, user 0.9s, sys 4.5s, output queue size 8467
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000606a6
  features: 1f8bfbff fffa320b
  extended: f1bf07ab 00407f5a
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 12 max 128
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586802
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.008 user 0.005 sys 0.022 real
advance: 51084 calls 0.001 user 0.007 sys 0.028 real
calc: 100735 calls 0.000 user 0.000 sys 0.021 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.001 sys 2.454 real
fetch: 100735 calls 0.000 user 0.000 sys 0.023 real
fetch_ref: 100735 calls 0.086 user 0.061 sys 0.417 real
idle: 51 calls 0.007 user 0.046 sys 24.944 real
init: 1 calls 0.036 user 0.009 sys 0.050 real
region: 100735 calls 0.000 user 0.003 sys 0.023 real
tracker: 100735 calls 0.034 user 0.021 sys 0.118 real
overall: 286720000 mem 1.549 user 6.809 sys 3.589 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory