.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (positive_somatic_control_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/9d2a0c5dbad80f6ba918762b32eb19/.command.log
Size: 1.1 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (positive_somatic_control_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/8b811973377a101e8902d4c260544c/positive_somatic_control_2.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/8b811973377a101e8902d4c260544c/positive_somatic_control_2.snv_indel.strelka.indel.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/9d2a0c5dbad80f6ba918762b32eb19/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/406f03094ebc68260e5ff3a73eb457/positive_somatic_control_2.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/9d2a0c5dbad80f6ba918762b32eb19/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/406f03094ebc68260e5ff3a73eb457/positive_somatic_control_2.snv_indel.tnseq.snv.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
[W::hts_idx_load3] The index file is older than the data file: positive_somatic_control_2.snv_indel.tnseq.snv.vcf.gz.tbi
ls: positive_somatic_control_2.snv_indel.merged.vcf.gz.csi: No such file or directory