File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/8322a7a5b837b32a00fd5a93057e3f/.command.err
Size
53.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

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[2026-06-01T21:51:46.828850Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:46.829667Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:46.829679Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:46.829684Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:46.829689Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQMV7r8'
[2026-06-01T21:51:46.829692Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:46.829697Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:46.829701Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:46.829705Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:46.829708Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:46.829712Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:46.829715Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:46.829719Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:46.829723Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:46.830860Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:46.831050Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:46.837711Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:46.838910Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:46.839158Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:46.839372Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:46.839650Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.840397Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.841911Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.842254Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.842596Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.844891Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.845798Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:46.846205Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.846565Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.846730Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.846867Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.846939Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847057Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847122Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847240Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847307Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847423Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847702Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.847976Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848044Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848235Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848309Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848423Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848497Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848618Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848685Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848807Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.848870Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.849033Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.849319Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.849668Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.849752Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.849877Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.849940Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850050Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850113Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850228Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850294Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850405Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850470Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850602Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.851365Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852160Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852268Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852428Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852502Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852634Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852798Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.852930Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.853235Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.853953Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.854055Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.854192Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.854261Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.854400Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.854467Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870310Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870460Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870569Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870751Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870830Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870920Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.870991Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.871104Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.871180Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.871250Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:46.875967Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.876590Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.876963Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.879996Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.881609Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-01T21:51:46.882754Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.882978Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:46.883469Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.884133Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.885088Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.888004Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.894566Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-01T21:51:46.900158Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-01T21:51:46.902047Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-01T21:51:46.904476Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-01T21:51:46.904994Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-01T21:51:46.909030Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:47.003981Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.004078Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.004115Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.004840Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.005295Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.005750Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.011373Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:47.014636Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-01T21:51:47.016106Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-01T21:51:48.027559Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.028292Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.032500Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-01T21:51:48.193682Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.194429Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.198270Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-01T21:51:48.259922Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.260730Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.264861Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-01T21:51:49.078031Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.078902Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.082248Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:49.143657Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.144498Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.148508Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-01T21:51:49.460256Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.461059Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.464769Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-01T21:51:49.493689Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.494456Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.498629Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-01T21:51:49.503332Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.504023Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.507400Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:49.568590Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.569301Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.573583Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-01T21:51:49.634722Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.635465Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.639538Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-01T21:51:49.700400Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.700504Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.701182Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.701839Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.706532Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-01T21:51:49.747978Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-01T21:51:49.768025Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.768151Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.768832Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.769410Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.774030Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-01T21:51:49.774789Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:49.834044Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.834185Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.834907Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.835256Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.839648Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:49.841165Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:49.900509Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.900659Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.901352Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.901975Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.906445Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-01T21:51:49.908321Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-01T21:51:50.117120Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.117850Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.121504Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-01T21:51:50.182777Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.183529Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.187958Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-01T21:51:50.348788Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.349467Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.353163Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-01T21:51:50.414294Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.415074Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.418878Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-01T21:51:50.580595Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.581320Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.585172Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-01T21:51:50.646290Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.647143Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.651340Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-01T21:51:50.712314Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.713007Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.717212Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-01T21:51:50.777922Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.778587Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.783318Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-01T21:51:51.045000Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.045639Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.050257Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-01T21:51:51.111128Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.111798Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.116516Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-01T21:51:51.177033Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.177778Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.181800Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-01T21:51:51.210649Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.211301Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.215547Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.215924Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-01T21:51:51.216475Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.220033Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-01T21:51:51.281148Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.281253Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.281808Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.282522Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.287445Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-01T21:51:51.289115Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-01T21:51:51.349501Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.349631Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.350387Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.351128Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.355813Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-01T21:51:51.357594Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:51.368413Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.369211Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.373139Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-01T21:51:51.401837Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.402675Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.406014Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-01T21:51:51.419209Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.419909Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.423140Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-01T21:51:51.452351Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.460365Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.574670Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.575293Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.578907Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-01T21:51:51.639942Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.004928Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.005506Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.009454Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-01T21:51:52.070453Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.072043Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.072457Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.075826Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-01T21:51:52.137074Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.204366Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.204904Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.208582Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-01T21:51:53.269409Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.885114Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.885658Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.889185Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-01T21:51:53.950546Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.716997Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.717513Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.721067Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:54.782379Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.782700Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.782896Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.783470Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.784004Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.790706Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:54.792679Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:54.820880Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:54.850272Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.850353Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.850376Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.850663Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.851375Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.855368Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:54.856664Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:54.884117Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.885430Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.885637Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.889312Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:54.950522Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:57.420250Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:05.719036Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:05.719036Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] 
[2026-06-01T21:52:05.719036Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:05.719121Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] 
[2026-06-01T21:52:05.719129Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:05.719137Z] [nf-608322a7a5b837b32a00fd5a93057e3f-caacf-sqwc2] [589_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec