[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwDZAVV/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwDZAVV/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwDZAVV/chr19_15162349-15162662.bed.gz.tbi
[2026-06-01T21:51:44.405185Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:44.405961Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:44.405984Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:44.405990Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:44.405996Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXwDZAVV'
[2026-06-01T21:51:44.406002Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:44.406008Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:44.406013Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:44.406018Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:44.406023Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:44.406027Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:44.406032Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:44.406036Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:44.406042Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:44.406686Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:44.406813Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:44.412786Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:44.413483Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:44.413767Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:44.413976Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:44.414223Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.414613Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.414707Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.414785Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.414907Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.414975Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.415096Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.415161Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.415282Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.415484Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.415853Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.416132Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.416913Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.417237Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.417399Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.419850Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.420259Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:44.420358Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.420624Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.420966Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421189Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421262Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421378Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421458Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421576Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421639Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421762Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421829Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.421953Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.422103Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.422765Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.422944Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423087Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423152Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423265Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423331Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423443Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423507Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423617Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423691Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423810Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.423874Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.424252Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.424644Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.425353Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.425420Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.425550Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.425670Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.425889Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.426175Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.426861Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.426967Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427087Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427151Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427269Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427333Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427449Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427519Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427630Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.427695Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428046Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428525Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428645Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428712Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428822Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428892Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.442615Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.442720Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.442789Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.442950Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.443021Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.443120Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.443187Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.443308Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.444526Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.444757Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:44.452940Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.453550Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.454094Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.454591Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.455834Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.456417Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.457423Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.459330Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.460258Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.463673Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:44.472303Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:51:44.475316Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:51:44.479918Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:51:44.481776Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:51:44.484636Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:51:44.486258Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:51:44.487419Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:44.630816Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.631767Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.635335Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:45.348297Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.349177Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.353325Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:45.514471Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.515377Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.519662Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:51:45.630995Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.631888Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.635551Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:45.696760Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.697663Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.701081Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:46.012897Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.013770Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.017494Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:46.379284Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.380202Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.385354Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:46.446469Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.446670Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.447514Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.447907Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.451480Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:51:46.452498Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:51:46.512587Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.512669Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.513426Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.513913Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.517284Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:51:46.518248Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:46.578616Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.579424Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.583361Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:51:46.794652Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.794763Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.795515Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.795971Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.800328Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:46.801512Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:46.861243Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.862086Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.865623Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:51:46.926428Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.927329Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.931366Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:46.992194Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.992977Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.996496Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:51:47.057562Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.058348Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.061865Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:47.123066Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.123852Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.127287Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:51:47.188565Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.189268Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.194060Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:51:47.304648Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.305432Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.309002Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:51:47.369923Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.370676Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.375001Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:47.787019Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.787984Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.792370Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:47.853138Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.853931Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.858288Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:51:48.119683Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.120473Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.123887Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:48.185158Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.185923Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.189933Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:48.401797Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.402593Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.406120Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:51:48.467052Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.467801Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.471364Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:48.500054Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.500801Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.504922Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:48.505267Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.505874Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.509010Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:51:48.570413Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.570548Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.571219Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.571807Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.576736Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:48.578098Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:51:48.637241Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.637974Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.641913Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:48.703089Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.703868Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.707593Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:48.918797Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.919508Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.923404Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:48.984466Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.985194Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.989317Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:49.050331Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.051119Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.054900Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:49.115828Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.115931Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.116701Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.117151Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.122117Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:51:49.123016Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:51:49.183079Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.183811Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.188058Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:51:49.248609Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.249323Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.253673Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:49.314725Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.315417Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.319511Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:51:49.348445Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.349108Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.353024Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:49.414116Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.414743Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.418916Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:51:50.031814Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.032459Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.036244Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:51:50.097302Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.097915Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.101288Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:51:50.162330Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.162951Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.167401Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:51:50.278436Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.279105Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.282225Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:51:50.343752Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.344368Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.348347Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:50.409274Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.409360Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.409886Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.410291Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.414669Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:50.415829Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:51:50.476915Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.476996Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.942582Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.942688Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.943215Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.943944Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.951626Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:51:50.955241Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:51:50.984506Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.992200Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.407936Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.408421Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.411848Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:51:51.473219Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.537713Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.538224Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.542174Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:51.603016Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.868257Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.868764Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.872289Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:51.933137Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.934678Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.935098Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.938173Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:51:51.999462Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.999735Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.999895Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.000450Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.001102Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.005783Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:52.007112Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:52.008128Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:52.066194Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.066287Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.066321Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.066705Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.067120Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.070147Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:52.101365Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:52.132767Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.132851Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.133100Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.136135Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:52.197369Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.969095Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:03.294528Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:03.294528Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] 
[2026-06-01T21:52:03.294528Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:03.294616Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] 
[2026-06-01T21:52:03.294623Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:03.294631Z] [nf-57343b82c8f669cfeb45814361cb9305-23d2f-fcp2w] [612_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec