File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/324a573d27809a029fd5ecd8099abe/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[2026-06-01T21:51:59.350830Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:59.351454Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:59.351467Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:59.351474Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:59.351481Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXUfiJPw'
[2026-06-01T21:51:59.351487Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:59.351493Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:59.351498Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:59.351503Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:59.351508Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:59.351512Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:59.351515Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:59.351519Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:59.351522Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:59.352481Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:59.352589Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:59.358825Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:59.359479Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:59.359781Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:59.360010Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:59.360320Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.360658Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.360745Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.360817Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.360933Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.361000Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.361118Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.361184Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.361320Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.361402Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.361806Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.362097Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.362286Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.362546Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.362630Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.362803Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.363518Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.364309Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.366383Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.366860Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367069Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:59.367438Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367787Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367862Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367985Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368049Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368170Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368296Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368415Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368482Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368595Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368665Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369012Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369333Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369452Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369517Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369768Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369852Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369963Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370027Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370143Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370208Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370318Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370488Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371550Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371618Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371734Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371799Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372053Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372266Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372788Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372859Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372978Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373049Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373164Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373230Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373345Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373414Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373524Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373591Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373705Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373902Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374728Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374836Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374964Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.375043Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390352Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390465Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390544Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390710Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390785Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390873Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.390940Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.391049Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.391122Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.392396Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:59.409226Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.409937Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.410599Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.411131Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.411784Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.412867Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.413841Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.414893Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.416398Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.419844Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:59.423929Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:59.431171Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:59.436910Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:59.437400Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:59.447339Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:59.449311Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:59.450456Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:59.685518Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.686412Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.690001Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:59.801415Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.802191Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.806058Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:59.867260Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.868174Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.871927Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:59.983065Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.983939Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.987635Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:52:00.048622Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.049502Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.052705Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:52:00.114046Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.114914Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.118024Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:52:00.881360Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.882150Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.885533Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:52:01.247823Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.248668Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.251875Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:52:01.313335Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.314176Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.318041Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:52:01.479388Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.480995Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.484390Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:52:01.545773Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.546612Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.550014Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:52:01.610896Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.611022Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.611802Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.612134Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.615500Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:52:01.616830Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:52:01.676725Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.677562Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.681316Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:52:01.842484Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.843326Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.847866Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:52:01.908943Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.909873Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.913937Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:52:02.476504Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.477454Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.481081Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:52:03.094728Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.095553Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.099771Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:52:03.160652Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.161453Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.165133Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:52:03.326547Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.327359Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.331353Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:52:03.360312Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.361119Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.364781Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:52:03.426084Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.426913Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.430743Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:52:03.843279Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.844092Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.848284Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:52:04.059616Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.059734Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.060428Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.060772Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.064399Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:52:04.065717Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:52:04.125348Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.125461Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.126130Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.126688Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.131286Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:52:04.132634Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:52:04.192373Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.192453Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.192477Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.193164Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.193719Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.194549Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.199439Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:52:04.201558Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:52:04.203108Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:52:04.261828Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.261930Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.262592Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.262998Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.267745Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:52:04.269393Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:52:04.328786Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.329518Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.333549Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:52:04.444598Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.445297Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.448610Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:52:04.509743Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.510413Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.513779Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:52:04.575120Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.575274Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.575318Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.575937Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.576322Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.576786Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.580946Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:52:04.582555Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:52:04.584070Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:52:04.643539Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.643641Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.644256Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.644618Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.648788Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:52:04.649997Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:52:04.653385Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.653852Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.657643Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:52:04.718733Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.719354Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.722611Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:52:04.783931Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.784574Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.788965Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:52:04.849920Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.850558Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.854451Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:52:05.166321Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.166967Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.170997Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:52:05.231982Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.232661Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.237137Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:52:05.900105Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.900725Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.903994Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:52:05.964976Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.965570Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.968793Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:52:06.030195Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.030798Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.035043Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:52:06.246278Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.246921Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.250015Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:52:06.311409Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.476090Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.476695Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.480435Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:52:06.541343Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.605718Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.606331Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.609864Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:52:06.671120Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.671197Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.671221Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.671697Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.672131Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.675573Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:52:06.676589Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:52:06.737302Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.737395Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.902041Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.902533Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.905753Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:52:06.967216Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.632994Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.633416Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.636278Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:52:07.697527Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.697615Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.698044Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.701582Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:52:07.762255Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.762551Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.762709Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.763275Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.763768Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.768724Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:52:07.770245Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:52:07.771114Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:52:07.828684Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.828762Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.828788Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.829031Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.829339Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.833009Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:52:07.833652Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:52:07.861579Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.861649Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.861858Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.864896Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:52:07.893967Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:09.912728Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:18.240473Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:18.240473Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] 
[2026-06-01T21:52:18.240473Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:18.240552Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] 
[2026-06-01T21:52:18.240560Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:18.240568Z] [nf-aa324a573d27809a029fd5ecd8099abe-cb4fa-pft8k] [601_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec