cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.9s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 422
progress 10% @chr2:19975530, elapsed 0.1s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 10463
progress 15% @chr2:189008924, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 5479
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 15947
progress 25% @chr4:88413077, elapsed 0.2s, est remaining 0.6s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 26209
progress 30% @chr5:146878002, elapsed 0.3s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 36250
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 46205
progress 40% @chr7:128805359, elapsed 0.4s, est remaining 0.5s, peak mem 175MB, user 0.0s, sys 0.0s, output queue size 3769
progress 45% @chr9:2039466, elapsed 0.4s, est remaining 0.5s, peak mem 346MB, user 0.0s, sys 0.0s, output queue size 13144
progress 50% @chr10:32021226, elapsed 0.4s, est remaining 0.4s, peak mem 346MB, user 0.0s, sys 0.1s, output queue size 23081
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 346MB, user 0.0s, sys 0.1s, output queue size 33545
progress 60% @chr12:21574144, elapsed 0.5s, est remaining 0.4s, peak mem 355MB, user 0.0s, sys 0.1s, output queue size 43092
progress 65% @chr13:49220338, elapsed 0.6s, est remaining 0.3s, peak mem 355MB, user 0.0s, sys 0.1s, output queue size 54145
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.3s, peak mem 364MB, user 0.0s, sys 0.1s, output queue size 64176
progress 75% @chr16:30964612, elapsed 0.7s, est remaining 0.2s, peak mem 364MB, user 0.0s, sys 0.1s, output queue size 73752
progress 80% @chr17:42543028, elapsed 0.7s, est remaining 0.2s, peak mem 364MB, user 0.0s, sys 0.1s, output queue size 84431
progress 85% @chr19:5686900, elapsed 0.8s, est remaining 0.1s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 94847
progress 90% @chr19:55694726, elapsed 0.8s, est remaining 0.1s, peak mem 409MB, user 0.0s, sys 0.1s, output queue size 104341
progress 95% @chr22:36504098, elapsed 1.2s, est remaining 0.1s, peak mem 2482MB, user 6.1s, sys 2.5s, output queue size 1378
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 1.2s, est remaining 0.0s, peak mem 2482MB, user 6.1s, sys 2.5s, output queue size 247
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813900
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.723 user 0.162 sys 2.185 real
done: 1 calls 0.236 user 0.119 sys 0.364 real
execute: 1 calls 0.002 user 0.010 sys 1.200 real
fetch_reads: 208647 calls 0.083 user 0.002 sys 0.154 real
fetch_ref: 2048 calls 0.010 user 0.019 sys 0.024 real
fetch_vcf: 2048 calls 0.773 user 0.047 sys 0.933 real
idle: 92 calls 0.002 user 0.002 sys 31.745 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 4.206 user 2.168 sys 6.977 real
overall: 2603536384 mem 9.210 user 14.821 sys 2.578 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory