File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/2761b058d95f28aa8941b08547af18/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:186000001, elapsed 0.0s, est remaining 0.9s, peak mem 102MB, user 0.1s, sys 0.9s, output queue size 24
progress 10% @chr2:69000001, elapsed 0.1s, est remaining 0.8s, peak mem 102MB, user 0.2s, sys 2.2s, output queue size 9
progress 15% @chr2:227000001, elapsed 0.1s, est remaining 0.7s, peak mem 102MB, user 0.2s, sys 3.4s, output queue size 22
progress 20% @chr3:178000001, elapsed 0.2s, est remaining 0.7s, peak mem 102MB, user 0.3s, sys 4.6s, output queue size 8
progress 25% @chr4:91000001, elapsed 0.2s, est remaining 0.6s, peak mem 102MB, user 0.4s, sys 5.8s, output queue size 26
progress 30% @chr5:114000001, elapsed 0.3s, est remaining 0.6s, peak mem 102MB, user 0.5s, sys 7.0s, output queue size 20
progress 35% @chr6:62000001, elapsed 0.3s, est remaining 0.6s, peak mem 102MB, user 0.5s, sys 8.2s, output queue size 25
progress 40% @chr7:46000001, elapsed 0.3s, est remaining 0.5s, peak mem 102MB, user 0.6s, sys 9.5s, output queue size 15
progress 45% @chr8:49000001, elapsed 0.4s, est remaining 0.5s, peak mem 102MB, user 0.7s, sys 10.9s, output queue size 8
progress 50% @chr9:63000001, elapsed 0.4s, est remaining 0.4s, peak mem 102MB, user 0.8s, sys 12.2s, output queue size 10
progress 55% @chr10:90000001, elapsed 0.5s, est remaining 0.4s, peak mem 102MB, user 0.9s, sys 13.4s, output queue size 5
progress 60% @chr11:98000001, elapsed 0.5s, est remaining 0.3s, peak mem 102MB, user 1.0s, sys 14.6s, output queue size 25
progress 65% @chr13:10000001, elapsed 0.6s, est remaining 0.3s, peak mem 102MB, user 1.0s, sys 15.9s, output queue size 21
progress 70% @chr14:52000001, elapsed 0.6s, est remaining 0.3s, peak mem 102MB, user 1.1s, sys 17.1s, output queue size 28
progress 75% @chr16:11000001, elapsed 0.6s, est remaining 0.2s, peak mem 102MB, user 1.2s, sys 18.2s, output queue size 16
progress 80% @chr17:82000001, elapsed 0.7s, est remaining 0.2s, peak mem 102MB, user 1.3s, sys 19.4s, output queue size 13
progress 85% @chr20:21000001, elapsed 0.7s, est remaining 0.1s, peak mem 102MB, user 1.4s, sys 20.5s, output queue size 10
progress 90% @chrX:36000001, elapsed 0.8s, est remaining 0.1s, peak mem 120MB, user 1.7s, sys 21.2s, output queue size 114
progress 95% @chrY:28000001, elapsed 0.8s, est remaining 0.0s, peak mem 126MB, user 2.2s, sys 22.0s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.1s, est remaining 0.0s, peak mem 141MB, user 3.1s, sys 23.4s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50047058
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.316 user 11.993 sys 13.039 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.002 sys 1.154 real
idle: 78 calls 0.007 user 0.036 sys 39.219 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 147996672 mem 3.330 user 24.050 sys 2.288 real