File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/da11453831f4cc4eb5650b850ea7fc/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-01T21:51:59.354167Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:59.355010Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:59.355019Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:59.355024Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:59.355028Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPkvzRz'
[2026-06-01T21:51:59.355032Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:59.355037Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:59.355041Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:59.355044Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:59.355048Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:59.355052Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:59.355056Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:59.355059Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:59.355063Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:59.355806Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:59.355881Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:59.361811Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:59.362496Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:59.362769Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:59.363052Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:59.363214Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.364254Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.364596Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.364784Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.364929Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.365769Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.365927Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.366176Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367447Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368224Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368496Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:59.368762Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368997Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369275Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369394Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369462Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369616Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369703Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369829Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.369896Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370090Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370159Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370294Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370510Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370874Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370940Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371355Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371419Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371540Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371604Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371714Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.371785Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372032Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372394Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372513Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372581Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372693Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372756Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372871Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.372932Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373043Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373103Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373221Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373286Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373393Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373515Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373843Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374401Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374529Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374655Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374790Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.374857Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.375006Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.375094Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.375230Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.375379Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.375706Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376238Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376431Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376514Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376642Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376711Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376829Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.376902Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394115Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394239Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394308Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394481Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394555Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394641Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394731Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394839Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394910Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.394957Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:59.404575Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.405150Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.405649Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.406531Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.407626Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.410249Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-01T21:51:59.414215Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.414896Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-01T21:51:59.415438Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.418551Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.419232Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-01T21:51:59.420460Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.432752Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-01T21:51:59.435774Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-01T21:51:59.437754Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-01T21:51:59.440324Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-01T21:51:59.441045Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-01T21:52:00.244701Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.245618Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.249162Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-01T21:52:00.310462Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.311327Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.314654Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-01T21:52:00.376563Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.377450Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.381486Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-01T21:52:00.386056Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.387193Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.390777Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-01T21:52:00.452079Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.453193Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.456644Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-01T21:52:00.518142Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.519258Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.523286Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-01T21:52:00.584139Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.585339Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.589451Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-01T21:52:00.650307Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.651516Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.655855Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-01T21:52:00.867173Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.868457Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.872674Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-01T21:52:00.933448Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.934616Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.939711Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-01T21:52:01.000021Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.001122Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.005053Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-01T21:52:01.005909Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.007094Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.010973Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-01T21:52:01.071899Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.072022Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.073063Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.073732Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.079252Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-01T21:52:01.081112Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-01T21:52:01.189707Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.190818Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.194538Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-01T21:52:01.255825Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.256859Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.260184Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-01T21:52:01.321168Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.322180Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.326572Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-01T21:52:01.437710Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.438768Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.442992Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-01T21:52:01.654429Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.655414Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.659374Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-01T21:52:01.688276Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.689200Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.693467Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-01T21:52:01.754584Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.755514Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.759942Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-01T21:52:01.820704Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.820802Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.821676Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.822356Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.827391Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-01T21:52:01.829045Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-01T21:52:01.890396Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.891171Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.895441Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-01T21:52:01.956558Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.957364Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.961618Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-01T21:52:02.273242Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.273913Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.277302Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-01T21:52:02.338738Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.339493Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.343649Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-01T21:52:02.555141Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.556084Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.560425Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-01T21:52:02.621304Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.622592Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.626234Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-01T21:52:02.687578Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.688479Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.692224Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-01T21:52:02.720932Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.721744Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.726063Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-01T21:52:02.726510Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.727397Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.731303Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:52:02.792322Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.792425Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.793261Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.794093Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.798760Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-01T21:52:02.800346Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:52:02.811571Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.812384Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.815989Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-01T21:52:02.844957Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.845715Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.849226Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-01T21:52:02.854091Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.854161Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.854801Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.855162Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.858879Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:52:02.860416Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-01T21:52:02.887747Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.888565Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.892466Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-01T21:52:02.897024Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.897088Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.897689Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.898051Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.901786Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-01T21:52:02.902662Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-01T21:52:02.963359Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.963483Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.963537Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.964225Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.964816Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.965084Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.969896Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-01T21:52:02.972104Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-01T21:52:02.973241Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-01T21:52:03.031210Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.031302Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.031341Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.032000Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.032596Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.033113Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.036963Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-01T21:52:03.040714Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-01T21:52:03.042061Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-01T21:52:03.099861Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.099962Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.100641Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.104240Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-01T21:52:03.165475Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.166135Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.169999Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-01T21:52:03.230925Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.231028Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.231619Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.235130Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-01T21:52:03.296667Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.329116Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.329803Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.333490Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-01T21:52:03.394990Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.395099Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.395128Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.395702Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.396274Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.400625Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-01T21:52:03.401682Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-01T21:52:03.461675Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.461773Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.278759Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.279294Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.283257Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-01T21:52:04.344360Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.344456Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.344957Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.348639Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-01T21:52:04.409741Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.410018Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.410211Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.410716Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.411311Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.417618Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:52:04.419434Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:52:04.420975Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:52:04.444182Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.444464Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.446607Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.447662Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:52:04.454252Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.454518Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.457853Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:52:04.486751Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.494624Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.494851Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.498790Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:52:04.559877Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.025577Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:09.903638Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:09.903638Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] 
[2026-06-01T21:52:09.903638Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:09.903720Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] 
[2026-06-01T21:52:09.903727Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:09.903736Z] [nf-74da11453831f4cc4eb5650b850ea7fc-ab1ac-nc6bn] [611_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec