File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/a1a8f56040a30a49712c3db24d466f/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-01T21:51:46.017338Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:46.018105Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:46.018115Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:46.018120Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:46.018125Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDLF5HY'
[2026-06-01T21:51:46.018129Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:46.018135Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:46.018139Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:46.018143Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:46.018146Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:46.018150Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:46.018154Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:46.018157Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:46.018161Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:46.018739Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:46.018930Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:46.024975Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:46.025827Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:46.026412Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:46.026922Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:46.027330Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.028235Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.028355Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.028508Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029000Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029393Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029665Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.029912Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030007Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030279Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.030892Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.031713Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.033863Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.034650Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:46.035218Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035510Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035694Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035769Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035902Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.035970Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036176Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036250Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036378Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036486Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.036999Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037416Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037557Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037627Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037749Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037817Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.037934Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038014Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038133Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038201Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038317Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038382Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.038733Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039278Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039844Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.039912Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040027Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040095Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040211Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040287Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040394Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040462Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040579Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040643Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.040844Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.041100Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042036Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042109Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042229Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042292Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042417Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042480Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042615Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042687Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042796Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042864Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.042976Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.043041Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.043950Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044328Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044449Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044524Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044638Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044700Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044813Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044877Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.044997Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.045062Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.045173Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.045236Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.060621Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.060744Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.060834Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061007Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061084Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061179Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061247Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061369Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061443Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:46.061495Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:46.065466Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.066224Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.066810Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.067447Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.067932Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.068755Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.070276Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.071296Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.072425Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.078993Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-01T21:51:46.085439Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-01T21:51:46.086523Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:46.087220Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-01T21:51:46.090883Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:46.096329Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-01T21:51:46.096690Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:46.099619Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-01T21:51:46.189681Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.189802Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.190730Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.191329Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.197479Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:46.199059Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-01T21:51:46.759740Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.760705Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.764798Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:46.825691Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.826731Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.830860Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-01T21:51:47.293082Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.293946Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.298486Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-01T21:51:47.358899Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.359831Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.363913Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-01T21:51:47.525323Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.526255Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.530532Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-01T21:51:47.842216Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.842310Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.843316Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.843849Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.848634Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-01T21:51:47.849680Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-01T21:51:47.909095Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.909202Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.910077Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.910743Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.915748Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-01T21:51:47.916878Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-01T21:51:47.976944Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.977833Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.982447Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-01T21:51:48.093569Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.094493Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.098518Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:48.102726Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.103507Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.107328Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-01T21:51:48.136423Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.137389Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.141713Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:48.170562Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.171435Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.175236Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-01T21:51:48.204155Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.205024Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.208574Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:48.570668Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.571542Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.575273Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-01T21:51:48.636237Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.637221Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.641522Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-01T21:51:48.752696Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.753653Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.757509Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-01T21:51:48.868687Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.869618Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.873014Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-01T21:51:48.934076Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.935114Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.938637Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-01T21:51:48.999481Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.999586Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.000381Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.001146Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.006288Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:49.065175Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-01T21:51:49.067424Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.068302Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.072157Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-01T21:51:49.133096Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.133985Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.138303Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-01T21:51:49.299402Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.300254Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.304254Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-01T21:51:49.365298Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.366169Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.369303Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:49.430641Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.431491Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.435657Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-01T21:51:50.048181Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.049245Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.053299Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-01T21:51:50.114153Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.115245Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.119238Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-01T21:51:50.330618Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.331596Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.335144Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:50.396366Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.397545Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.401688Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-01T21:51:50.663218Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.664034Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.668690Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-01T21:51:50.879961Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.880664Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.884350Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-01T21:51:50.897069Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.897741Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.901586Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:50.929986Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.930787Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.934398Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:50.935077Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.935804Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.940620Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-01T21:51:51.153107Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.153858Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.157249Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-01T21:51:51.218553Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.219317Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.222734Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-01T21:51:51.284049Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.284825Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.288678Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-01T21:51:51.399890Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.400693Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.404499Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:51.465365Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.466155Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.469225Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:51.530741Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.531521Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.535288Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-01T21:51:51.547836Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.548515Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.552339Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-01T21:51:51.613357Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.614128Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.617608Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-01T21:51:51.678650Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.679301Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.683264Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:51.744057Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.744768Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.748771Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:51.753147Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.753739Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.757237Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-01T21:51:51.818257Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.818379Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.818992Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.819746Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.822816Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:51.824612Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:51.884614Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.885251Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.890352Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-01T21:51:51.950842Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.951480Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.954834Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:52.016000Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.016671Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.020261Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-01T21:51:52.081470Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.081556Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.082097Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.082559Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.086197Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:52.087676Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:52.099072Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.099648Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.103437Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-01T21:51:52.132247Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.132892Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.136068Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-01T21:51:52.149360Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.149458Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.149967Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.150312Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.153821Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-01T21:51:52.155466Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:52.182601Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.199223Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.199357Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.263870Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.264515Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.268114Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:52.329238Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.443690Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.444235Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.448170Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-01T21:51:52.509099Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.325696Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.326364Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.330109Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-01T21:51:53.391169Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.407229Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.407751Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.411213Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-01T21:51:53.472744Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.787865Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.788392Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.791207Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:53.852524Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.852861Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.853038Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.853325Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.853982Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.860179Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:53.860577Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:53.861528Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:53.886143Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.886493Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.888593Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.888894Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.890767Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:53.891971Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:53.892680Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.957007Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.957087Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.957312Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.960464Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:54.021657Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:56.593869Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:04.906981Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:04.906981Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] 
[2026-06-01T21:52:04.906981Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:04.907064Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] 
[2026-06-01T21:52:04.907074Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:04.907082Z] [nf-aca1a8f56040a30a49712c3db24d466f-dc6f5-75d47] [606_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec