Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5bf42a970fe4b797f36c83e3a6e11b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5bf42a970fe4b797f36c83e3a6e11b/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-nv944b_p because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:56:24,064 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:56:24,924 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:56:25,098 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:56:26,083 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:56:26,246 - cnv_pipe.batch.run_model - INFO - Processing cluster 929 with 193 probes
2026-06-01 21:56:26,639 - cnv_pipe.batch.run_model.cluster929 - INFO - Child process started for cluster 929 with 193 probes
2026-06-01 21:57:25,611 - cnv_pipe.batch.run_model.cluster929 - INFO - Child process finished cluster 929. Wrote cluster_929_samples.csv and cluster_929_params.csv
2026-06-01 21:57:25,612 - cnv_pipe.batch.run_model - INFO - Cluster 929 finished in 59.37 seconds. Status: SUCCESS