File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/aa859e81ae44b991ac6c08638a4ea3/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/aa859e81ae44b991ac6c08638a4ea3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/aa859e81ae44b991ac6c08638a4ea3/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKOHL3z/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKOHL3z/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKOHL3z/chr19_15162349-15162662.bed.gz.tbi
[2026-06-01T21:51:43.880333Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:43.882247Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:43.882268Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:43.882277Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:43.882285Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKOHL3z'
[2026-06-01T21:51:43.882292Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:43.882302Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:43.882309Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:43.882316Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] memMb: 1015785
[2026-06-01T21:51:43.882324Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:43.882332Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:43.882339Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:43.882347Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:43.882354Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:43.883045Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:43.883105Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:43.890657Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:43.891583Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:43.891735Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:43.892004Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:43.892281Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.892763Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.892885Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.892982Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.893142Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.893281Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.893759Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.893845Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.894033Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.894248Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.894572Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.895142Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.895271Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.897209Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.897434Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:43.897565Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.897798Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.897901Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.898249Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.898521Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.898875Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899204Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899357Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899450Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899630Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899717Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899889Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899976Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.900126Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.900318Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.900750Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.900848Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901006Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901094Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901246Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901335Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901484Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901570Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.901762Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.902225Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.902382Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.902473Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.902624Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.902709Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.904037Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.904420Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.904610Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.904795Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.904959Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.905053Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.905200Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.905292Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.905546Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906174Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906340Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906427Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906581Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906669Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906822Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.906914Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.907066Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.907152Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.907480Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.908088Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.908244Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.908343Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.928922Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929103Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929204Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929428Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929535Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929656Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929751Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.929933Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.931764Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:43.932614Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:43.932740Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.933677Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.934385Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.934829Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.935293Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.936135Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.936729Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.937280Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.941563Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.942098Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:51:43.945735Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:51:43.949646Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:43.952196Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:43.956859Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:43.958970Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:43.959380Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:43.959895Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:44.060073Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.060219Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.062267Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.062990Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.067823Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:44.068520Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:51:44.177893Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.178873Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.182469Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:44.243888Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.244896Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.248722Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:45.513842Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.514939Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.518348Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:45.579987Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.581005Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.584736Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:51:45.946938Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.948548Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.952050Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:46.013179Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.014197Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.017603Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:46.078673Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.079603Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.083131Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:51:46.112091Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.112993Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.115853Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:46.179539Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.180441Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.183985Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:51:46.396391Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.397296Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.400917Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:46.512743Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.513688Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.516838Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:46.629128Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.630024Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.633343Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:51:46.695249Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.696145Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.699335Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:51:46.861741Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.862660Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.865963Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:51:46.927081Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.927975Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.931091Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:51:46.992351Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.993202Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.996302Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:51:47.458818Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.459779Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.463501Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:51:47.775605Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.776926Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.780018Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:51:47.841252Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.842605Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.845918Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:51:48.057382Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.057501Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.058745Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.059193Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.063185Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:51:48.064458Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:48.125723Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.125834Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.127258Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.127829Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.131107Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:48.132088Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:51:48.192368Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.193638Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.196971Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:48.609000Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.609821Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.613100Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:51:48.674307Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.675177Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.678602Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:51:49.091031Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.091828Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.095317Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:51:49.157045Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.157818Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.161415Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:51:49.373870Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.374721Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.377621Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:51:49.441353Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.441458Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.442161Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.444046Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.446347Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:51:49.447187Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:51:49.508510Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.509262Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.512755Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:51:49.514182Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.514937Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.517698Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:51:49.547390Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.548153Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.550462Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.551161Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:49.551837Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.554390Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:49.615994Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.616099Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.616767Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.619067Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.620995Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:49.621945Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:51:49.834343Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.835151Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.838344Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:49.899707Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.900473Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.903561Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:49.966270Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.966979Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.970309Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:51:50.132171Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.132886Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.135969Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:50.197390Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.197497Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.198099Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.199928Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.201172Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:50.204000Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:51:50.265682Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.265777Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.266390Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.266960Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.270036Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:51:50.271324Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:51:50.331821Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.331909Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.332503Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.332913Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.336848Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:50.337447Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:50.649078Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.649725Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.652897Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:51:50.715615Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.482275Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.482885Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.486241Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:51:51.547134Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.762076Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.762603Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.765567Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:51.826958Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.991436Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.991975Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.995133Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:51:52.007993Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.008535Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.011133Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:52.040881Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.041751Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.757181Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.757725Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.760534Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:51:52.822018Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.487598Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.488108Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.491134Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:53.552465Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.970081Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.970565Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.973086Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:55.003738Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.004037Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.004191Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.004625Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.005918Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.008827Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:55.010482Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:55.011082Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:55.040719Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.040790Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.040818Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.041062Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.042565Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.044167Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:55.045224Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:55.074777Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.074844Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.075056Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.077455Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:55.139157Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.859423Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:17.001875Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:17.001875Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] 
[2026-06-01T21:52:17.001875Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:17.001937Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] 
[2026-06-01T21:52:17.001946Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:17.001955Z] [nf-0daa859e81ae44b991ac6c08638a4ea3-7a0d8-9l5lh] [561_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec