cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.1s, est remaining 1.6s, peak mem 72MB, user 0.1s, sys 0.1s, output queue size 483
progress 10% @chr15:40929847, elapsed 0.2s, est remaining 1.5s, peak mem 72MB, user 0.1s, sys 0.3s, output queue size 2727
progress 15% @chr15:63911908, elapsed 0.3s, est remaining 1.5s, peak mem 72MB, user 0.2s, sys 0.6s, output queue size 5348
progress 20% @chr15:87989891, elapsed 0.4s, est remaining 1.4s, peak mem 72MB, user 0.2s, sys 0.7s, output queue size 7632
progress 25% @chr16:1946938, elapsed 0.4s, est remaining 1.3s, peak mem 78MB, user 0.3s, sys 0.9s, output queue size 9319
progress 30% @chr16:23529502, elapsed 0.5s, est remaining 1.3s, peak mem 90MB, user 0.3s, sys 1.1s, output queue size 11800
progress 35% @chr16:66558190, elapsed 0.7s, est remaining 1.3s, peak mem 96MB, user 0.3s, sys 1.4s, output queue size 14405
progress 40% @chr16:89279067, elapsed 0.8s, est remaining 1.1s, peak mem 99MB, user 0.4s, sys 1.5s, output queue size 16879
progress 45% @chr17:10306939, elapsed 0.8s, est remaining 1.0s, peak mem 111MB, user 0.4s, sys 1.8s, output queue size 19492
progress 50% @chr17:36333876, elapsed 0.9s, est remaining 0.9s, peak mem 117MB, user 0.4s, sys 2.0s, output queue size 22100
progress 55% @chr17:45118291, elapsed 1.0s, est remaining 0.8s, peak mem 129MB, user 0.4s, sys 2.1s, output queue size 1444
progress 60% @chr17:68370444, elapsed 1.0s, est remaining 0.7s, peak mem 141MB, user 0.5s, sys 2.3s, output queue size 3972
progress 65% @chr18:5890198, elapsed 1.1s, est remaining 0.6s, peak mem 147MB, user 0.5s, sys 2.5s, output queue size 6693
progress 70% @chr18:62574057, elapsed 1.1s, est remaining 0.5s, peak mem 156MB, user 0.5s, sys 2.7s, output queue size 9068
progress 75% @chr19:6919548, elapsed 1.2s, est remaining 0.4s, peak mem 168MB, user 0.5s, sys 2.9s, output queue size 11457
progress 80% @chr19:15272815, elapsed 1.3s, est remaining 0.3s, peak mem 171MB, user 0.6s, sys 3.2s, output queue size 13719
progress 85% @chr19:36925200, elapsed 1.3s, est remaining 0.2s, peak mem 183MB, user 0.6s, sys 3.4s, output queue size 16031
progress 90% @chr19:46469733, elapsed 1.4s, est remaining 0.2s, peak mem 189MB, user 0.6s, sys 3.5s, output queue size 18200
progress 95% @chr20:36916678, elapsed 1.4s, est remaining 0.1s, peak mem 201MB, user 0.6s, sys 3.7s, output queue size 20840
progress 100% @chr20:63962273, elapsed 1.5s, est remaining 0.0s, peak mem 210MB, user 0.7s, sys 3.9s, output queue size 23278
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692763
output file size: 22307
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.004 user 0.005 sys 0.018 real
advance: 49760 calls 0.000 user 0.006 sys 0.026 real
calc: 97912 calls 0.000 user 0.000 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.002 sys 3.038 real
fetch: 97912 calls 0.003 user 0.000 sys 0.019 real
fetch_ref: 97912 calls 0.047 user 0.041 sys 0.401 real
idle: 51 calls 0.003 user 0.008 sys 30.986 real
init: 1 calls 0.030 user 0.010 sys 0.044 real
region: 97912 calls 0.005 user 0.001 sys 0.023 real
tracker: 97912 calls 0.018 user 0.010 sys 0.094 real
overall: 220340224 mem 1.351 user 6.848 sys 4.178 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory