Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/044c44777629bed081d5f2027325e6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/044c44777629bed081d5f2027325e6/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rrhi0jzn because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:56:10,948 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:56:11,832 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:56:12,010 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:56:13,042 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:56:13,220 - cnv_pipe.batch.run_model - INFO - Processing cluster 861 with 197 probes
2026-06-01 21:56:13,608 - cnv_pipe.batch.run_model.cluster861 - INFO - Child process started for cluster 861 with 197 probes
2026-06-01 21:57:12,941 - cnv_pipe.batch.run_model.cluster861 - INFO - Child process finished cluster 861. Wrote cluster_861_samples.csv and cluster_861_params.csv
2026-06-01 21:57:12,942 - cnv_pipe.batch.run_model - INFO - Cluster 861 finished in 59.72 seconds. Status: SUCCESS