cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 4238
progress 10% @chr2:19951415, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 3006
progress 15% @chr2:189056973, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 13404
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 23889
progress 25% @chr4:88459347, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2859
progress 30% @chr5:147279247, elapsed 0.2s, est remaining 0.5s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 12906
progress 35% @chr6:127475293, elapsed 0.2s, est remaining 0.4s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 22886
progress 40% @chr7:128811800, elapsed 0.3s, est remaining 0.4s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 32332
progress 45% @chr9:2039466, elapsed 0.3s, est remaining 0.4s, peak mem 277MB, user 0.0s, sys 0.0s, output queue size 41709
progress 50% @chr10:32015510, elapsed 0.3s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 51641
progress 55% @chr11:48306223, elapsed 0.4s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 62104
progress 60% @chr12:21765723, elapsed 0.4s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 71660
progress 65% @chr13:49222040, elapsed 0.4s, est remaining 0.2s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 82704
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 304MB, user 0.0s, sys 0.1s, output queue size 6337
progress 75% @chr16:30893212, elapsed 0.5s, est remaining 0.2s, peak mem 304MB, user 0.0s, sys 0.1s, output queue size 15901
progress 80% @chr17:42553439, elapsed 0.5s, est remaining 0.1s, peak mem 304MB, user 0.0s, sys 0.1s, output queue size 26589
progress 85% @chr19:5664022, elapsed 0.6s, est remaining 0.1s, peak mem 337MB, user 0.0s, sys 0.1s, output queue size 37009
progress 90% @chr19:55708912, elapsed 0.6s, est remaining 0.1s, peak mem 340MB, user 0.0s, sys 0.1s, output queue size 46498
progress 95% @chr22:36929362, elapsed 1.0s, est remaining 0.1s, peak mem 2497MB, user 6.4s, sys 1.9s, output queue size 3228
progress 100% @chr6_GL000254v2_alt:3877373, elapsed 1.0s, est remaining 0.0s, peak mem 2497MB, user 6.5s, sys 1.9s, output queue size 8740
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395347
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.897 user 0.112 sys 2.266 real
done: 1 calls 0.277 user 0.109 sys 0.387 real
execute: 1 calls 0.011 user 0.000 sys 0.999 real
fetch_reads: 208647 calls 0.043 user 0.000 sys 0.160 real
fetch_ref: 2042 calls 0.002 user 0.010 sys 0.017 real
fetch_vcf: 2042 calls 0.844 user 0.069 sys 0.991 real
idle: 92 calls 0.003 user 0.001 sys 31.573 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.314 user 1.684 sys 6.721 real
overall: 2618433536 mem 10.311 user 6.820 sys 2.375 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory