cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:101760685, elapsed 0.0s, est remaining 0.9s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 35
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.8s, peak mem 75MB, user 0.1s, sys 0.3s, output queue size 2269
progress 15% @chr15:63939232, elapsed 0.1s, est remaining 0.8s, peak mem 90MB, user 0.1s, sys 0.5s, output queue size 4898
progress 20% @chr15:87980531, elapsed 0.2s, est remaining 0.7s, peak mem 105MB, user 0.2s, sys 0.7s, output queue size 7177
progress 25% @chr16:1953956, elapsed 0.2s, est remaining 0.6s, peak mem 108MB, user 0.2s, sys 0.8s, output queue size 8865
progress 30% @chr16:23557205, elapsed 0.3s, est remaining 0.6s, peak mem 111MB, user 0.2s, sys 1.1s, output queue size 11353
progress 35% @chr16:66563122, elapsed 0.3s, est remaining 0.6s, peak mem 132MB, user 0.3s, sys 1.4s, output queue size 13947
progress 40% @chr16:89286670, elapsed 0.4s, est remaining 0.6s, peak mem 141MB, user 0.3s, sys 1.5s, output queue size 16422
progress 45% @chr17:10311103, elapsed 0.4s, est remaining 0.5s, peak mem 147MB, user 0.3s, sys 1.7s, output queue size 19038
progress 50% @chr17:36328061, elapsed 0.5s, est remaining 0.5s, peak mem 159MB, user 0.4s, sys 1.9s, output queue size 21633
progress 55% @chr17:45102951, elapsed 0.5s, est remaining 0.4s, peak mem 168MB, user 0.4s, sys 2.1s, output queue size 23874
progress 60% @chr17:68401360, elapsed 0.6s, est remaining 0.4s, peak mem 177MB, user 0.4s, sys 2.5s, output queue size 26407
progress 65% @chr18:5433903, elapsed 0.6s, est remaining 0.3s, peak mem 192MB, user 0.5s, sys 2.7s, output queue size 29126
progress 70% @chr18:62550348, elapsed 0.7s, est remaining 0.3s, peak mem 201MB, user 0.5s, sys 2.9s, output queue size 31502
progress 75% @chr19:6919548, elapsed 0.7s, est remaining 0.2s, peak mem 210MB, user 0.5s, sys 3.1s, output queue size 33891
progress 80% @chr19:15265354, elapsed 0.8s, est remaining 0.2s, peak mem 219MB, user 0.6s, sys 3.3s, output queue size 36151
progress 85% @chr19:36937147, elapsed 0.8s, est remaining 0.1s, peak mem 231MB, user 0.6s, sys 3.5s, output queue size 38466
progress 90% @chr19:46493558, elapsed 0.9s, est remaining 0.1s, peak mem 240MB, user 0.6s, sys 3.7s, output queue size 40636
progress 95% @chr20:36916678, elapsed 0.9s, est remaining 0.0s, peak mem 246MB, user 0.7s, sys 3.8s, output queue size 43273
progress 100% @chr20:63278117, elapsed 1.0s, est remaining 0.0s, peak mem 258MB, user 0.7s, sys 4.0s, output queue size 45712
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586802
output file size: 22310
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.020 sys 0.018 real
advance: 49760 calls 0.010 user 0.013 sys 0.026 real
calc: 97912 calls 0.006 user 0.011 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.002 sys 1.725 real
fetch: 97912 calls 0.009 user 0.000 sys 0.018 real
fetch_ref: 97912 calls 0.110 user 0.090 sys 0.384 real
idle: 39 calls 0.004 user 0.024 sys 21.464 real
init: 1 calls 0.039 user 0.001 sys 0.043 real
region: 97912 calls 0.019 user 0.001 sys 0.021 real
tracker: 97912 calls 0.009 user 0.003 sys 0.088 real
overall: 273813504 mem 1.193 user 6.039 sys 2.844 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory