Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/8e752b822684b9d01040dbb8595f70/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/8e752b822684b9d01040dbb8595f70/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vfo42yj3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:56:55,128 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:56:55,959 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:56:56,133 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:56:57,063 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:56:57,137 - cnv_pipe.batch.run_model - INFO - Processing cluster 1098 with 165 probes
2026-06-01 21:56:57,640 - cnv_pipe.batch.run_model.cluster1098 - INFO - Child process started for cluster 1098 with 165 probes
2026-06-01 21:57:48,057 - cnv_pipe.batch.run_model.cluster1098 - INFO - Child process finished cluster 1098. Wrote cluster_1098_samples.csv and cluster_1098_params.csv
2026-06-01 21:57:48,058 - cnv_pipe.batch.run_model - INFO - Cluster 1098 finished in 50.92 seconds. Status: SUCCESS