File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/cd1411ffa0691f8b964b2e2d40e15f/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-01T21:51:59.316023Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:59.316772Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:59.316786Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:59.316791Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:59.316796Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPZSYJC'
[2026-06-01T21:51:59.316800Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:59.316807Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:59.316810Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:59.316814Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:59.316819Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:59.316823Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:59.316832Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:59.316843Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:59.316849Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:59.317415Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:59.317548Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:59.323813Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:59.325246Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:59.325458Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:59.325669Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:59.325989Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326333Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326436Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326510Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326631Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326699Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326821Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.326976Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.327390Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.327697Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.327886Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.328112Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.328259Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.328677Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.328957Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.332110Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.332365Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.332623Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:59.333311Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.333624Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.333852Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.333922Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334041Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334123Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334240Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334302Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334422Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334499Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.334709Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335059Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335176Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335271Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335385Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335449Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335559Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335624Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335738Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335804Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.335914Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.336026Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.336432Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.336814Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.336934Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.337001Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.337457Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.337523Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.337673Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.337738Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.338079Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.338246Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.339104Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.339883Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.340557Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.340625Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.340741Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.340818Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.340945Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.341013Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.341125Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.341190Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.341368Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.341429Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.341970Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.342456Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.342577Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.342704Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.342819Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.342882Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357178Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357338Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357423Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357626Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357700Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357793Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.357866Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.359910Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.360022Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.360080Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:59.364217Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.364867Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.365143Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.365645Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.366210Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367097Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.367794Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.368850Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.370041Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.373927Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:59.379361Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:51:59.384184Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:51:59.387338Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:59.391487Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:51:59.393698Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:59.394258Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:51:59.395117Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:59.492219Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.493201Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.511884Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:59.559476Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.560816Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.565607Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:59.727037Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.727982Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.732231Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:52:00.444801Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.445754Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.450028Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:52:00.511045Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.511864Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.515640Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:52:00.576800Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.577725Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.581289Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:52:00.642401Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.643326Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.647476Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:52:01.311134Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.311965Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.315530Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:52:01.778690Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.779698Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.784317Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:52:01.895666Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.896608Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.900846Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:52:01.961344Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.962246Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.966430Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:52:02.228259Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.229089Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.232958Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:52:02.261917Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.262779Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.266457Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:52:02.271235Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.271940Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.276007Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:52:02.304771Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.305618Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.309436Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:52:02.471011Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.471905Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.475662Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:52:02.536989Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.537837Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.541314Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:52:02.602501Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.603329Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.606747Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:52:02.668175Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.669060Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.672977Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:52:03.085607Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.086488Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.090450Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:52:03.151282Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.152075Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.156768Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.157397Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:52:03.158200Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.162015Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:52:03.223194Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.224008Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.228068Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:52:03.289527Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.290436Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.294399Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:52:03.355725Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.356561Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.360470Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:52:03.421822Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.422670Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.426810Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:52:03.487896Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.488047Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.488841Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.489321Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.493436Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:52:03.495002Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:52:03.497986Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.498619Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.501786Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:52:03.563255Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.564126Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.567946Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:52:03.729476Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.730481Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.734191Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:52:03.795702Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.796568Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.800838Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:52:03.911952Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.912780Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.916822Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:52:04.379271Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.380173Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.384856Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:52:04.595687Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.596539Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.600075Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:52:04.661505Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.662466Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.666304Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:52:04.727585Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.728600Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.732793Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:52:04.844007Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.844879Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.848515Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:52:05.010128Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.010952Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.015051Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:52:05.076482Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.077636Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.081472Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:52:05.744668Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.745691Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.749203Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:52:05.961004Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.961937Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.966256Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:52:06.027073Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.028035Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.031613Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:52:06.093180Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.093992Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.097695Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:52:06.208940Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.210030Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.213363Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:52:06.274586Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.275441Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.279323Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:52:06.340458Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.341272Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.344931Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:52:06.406349Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.407231Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.411873Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:52:06.472122Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.472903Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.476785Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:52:06.538028Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.538702Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.542453Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:52:06.603624Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.604344Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.607895Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:52:06.668985Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.669823Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.673786Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:52:06.735330Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.799909Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.800460Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.804151Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:52:06.864983Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.130202Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.130952Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.134497Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:52:07.195709Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.195820Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.196418Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.200001Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:52:07.260984Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.277202Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.277757Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.281196Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:52:07.342332Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.607476Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.608062Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.611694Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:52:07.672854Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.737230Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.737758Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.741290Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:52:07.802435Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.317992Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.318517Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.321370Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:52:08.351068Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.351349Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.351493Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.352156Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.352582Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.356586Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:52:08.358025Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:52:08.359123Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:52:08.385355Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.385630Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.387640Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.387707Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.387963Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.388701Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:52:08.391113Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:52:08.420412Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.420466Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.420636Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.423327Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:52:08.452562Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:09.920342Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:18.205345Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:18.205345Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] 
[2026-06-01T21:52:18.205345Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:18.205424Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] 
[2026-06-01T21:52:18.205431Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:18.205439Z] [nf-81cd1411ffa0691f8b964b2e2d40e15f-c4fd6-6cczc] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec