Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/81a0bbd77c18e74eacd36ee2826f96/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/8956dc14bddef04aa6d104f1de874c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/81a0bbd77c18e74eacd36ee2826f96/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/8956dc14bddef04aa6d104f1de874c/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXS7M9jP/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXS7M9jP/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXS7M9jP/chr4_22420786-22421189.bed.gz.tbi
[2026-06-01T21:51:40.094205Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:40.097447Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:40.097479Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:40.097487Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:40.097502Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXS7M9jP'
[2026-06-01T21:51:40.097509Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:40.097522Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:40.097529Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:40.097537Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:40.097541Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:40.097556Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:40.097563Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:40.097572Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:40.097590Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:40.098329Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:40.098565Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:40.105636Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:40.106622Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:40.106874Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:40.107087Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:40.107325Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.107770Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.107862Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.107937Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.108071Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.108144Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.108277Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.108343Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.108557Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.108742Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.109280Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.109431Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.109628Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.110174Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.112052Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.113044Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.113550Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:40.113866Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.114183Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.114486Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.114700Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.114773Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.114906Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.114976Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.115100Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.115167Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.115301Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.115368Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.115520Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.115737Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116159Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116230Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116355Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116418Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116530Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116658Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116782Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116846Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.116964Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.117033Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.117291Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.117662Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.117781Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.117845Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.117955Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118024Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118174Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118295Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118414Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118484Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118615Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118706Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.118964Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119461Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119576Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119639Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119751Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119817Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119926Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.119991Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.120106Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.120178Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.120294Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.120359Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.120512Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.120765Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121303Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121367Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121482Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121551Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121656Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121723Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121832Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.121894Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.123383Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124062Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124196Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124266Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124381Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124446Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124560Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124621Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124733Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124798Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124907Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.124974Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.125259Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.125424Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.126650Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.127404Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.127581Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.127676Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.127831Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.127920Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.128117Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.128184Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.147531Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.147720Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.147809Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.148154Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.148269Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.148975Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.150080Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.150344Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.150621Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.151596Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:40.151686Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.151952Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:40.152427Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.153247Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.153772Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.155327Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.156174Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.157367Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.158436Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.161872Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-01T21:51:40.168298Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-01T21:51:40.174291Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-01T21:51:40.174878Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-01T21:51:40.181080Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-01T21:51:40.184671Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-01T21:51:40.185250Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-01T21:51:40.189561Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-01T21:51:40.301901Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.301981Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.303026Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.303649Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.308732Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-01T21:51:40.310187Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-01T21:51:40.519855Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.520956Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.524639Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-01T21:51:41.087424Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.087496Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.088413Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.088753Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.094500Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-01T21:51:41.204354Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.205341Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.210129Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-01T21:51:41.321364Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.322547Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.325810Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-01T21:51:41.387090Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.388174Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.391837Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-01T21:51:41.553305Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.554401Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.557362Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-01T21:51:41.618726Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.619896Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.623328Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-01T21:51:41.885265Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.886334Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.889450Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-01T21:51:41.950763Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.951817Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.954437Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.955455Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.955790Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-01T21:51:41.958539Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-01T21:51:42.671528Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.672654Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.675911Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-01T21:51:42.736895Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.737936Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.741846Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-01T21:51:42.852964Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.854022Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.857361Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-01T21:51:42.872681Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-01T21:51:42.886313Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.886416Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.887460Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.887877Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.891534Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-01T21:51:42.892574Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-01T21:51:42.920282Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.921181Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.924787Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-01T21:51:42.925306Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.926047Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.929452Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-01T21:51:42.990512Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.991532Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.995348Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-01T21:51:43.858440Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.859490Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.862931Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-01T21:51:43.923795Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.923895Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.924823Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.925285Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.928839Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-01T21:51:43.929968Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-01T21:51:43.990116Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.990190Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.991099Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.991455Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.995367Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-01T21:51:43.997328Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-01T21:51:44.056535Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.056678Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.057546Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.057929Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.060861Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-01T21:51:44.062576Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-01T21:51:44.122327Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.122430Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.122486Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.123403Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.123876Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.124382Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.127554Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-01T21:51:44.130200Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-01T21:51:44.130774Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-01T21:51:44.190105Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.191024Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.193809Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-01T21:51:44.255410Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.256212Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.259472Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-01T21:51:44.370889Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.370973Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.371827Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.372408Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.377227Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-01T21:51:44.378434Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-01T21:51:44.438270Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.439233Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.442485Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-01T21:51:44.754608Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.755547Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.759836Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-01T21:51:45.071475Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.072446Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.075783Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-01T21:51:45.089013Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.089839Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.093006Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-01T21:51:45.093449Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.094122Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.097505Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-01T21:51:45.126044Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.126880Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.130186Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-01T21:51:45.134802Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.135661Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.138779Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-01T21:51:45.167826Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.168949Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.172290Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-01T21:51:45.233596Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.234536Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.237987Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-01T21:51:45.299019Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.299903Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.303531Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-01T21:51:45.465063Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.466009Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.470197Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-01T21:51:45.681504Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.683182Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.687301Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-01T21:51:46.149090Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.150349Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.154007Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-01T21:51:46.215186Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.216563Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.220487Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-01T21:51:46.281677Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.282954Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.287245Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-01T21:51:46.448360Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.449758Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.453008Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-01T21:51:46.514430Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.515999Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.519597Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-01T21:51:46.580799Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.582038Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.585897Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-01T21:51:46.586551Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.587620Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.590836Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-01T21:51:46.753001Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.754017Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.757663Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-01T21:51:46.818881Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.819901Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.823823Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-01T21:51:46.884931Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.885934Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.889649Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-01T21:51:46.902394Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.903271Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.907134Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-01T21:51:46.936184Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.937158Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.940852Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-01T21:51:46.941421Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.941994Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.945626Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-01T21:51:47.007158Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.007361Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.008239Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.008724Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.013525Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-01T21:51:47.014816Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-01T21:51:47.073917Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.074037Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.074919Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.075407Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.079577Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-01T21:51:47.081132Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-01T21:51:47.140535Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.140649Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.141417Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.142061Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.146435Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-01T21:51:47.147751Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-01T21:51:47.207682Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.208660Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.212311Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-01T21:51:47.273250Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.274343Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.278519Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-01T21:51:47.339560Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.340500Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.344659Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-01T21:51:47.373397Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.374456Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.378251Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-01T21:51:47.378784Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.379638Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.382497Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-01T21:51:47.412003Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.413064Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.416751Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-01T21:51:47.417664Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.418859Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.419605Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.421157Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.424230Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-01T21:51:47.425964Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-01T21:51:47.485655Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.485782Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.485827Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.486933Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.487370Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.487811Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.494455Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-01T21:51:47.496267Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-01T21:51:47.497813Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-01T21:51:47.554777Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.554915Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.555836Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.556308Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.561452Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-01T21:51:47.563388Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-01T21:51:47.621919Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.622855Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.626762Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-01T21:51:47.631272Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.632039Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.635674Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-01T21:51:47.696914Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.697033Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.697086Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.698029Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.701967Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-01T21:51:47.762886Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.827510Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.828457Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.831904Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-01T21:51:47.893275Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.208753Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.209445Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.212830Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-01T21:51:48.274000Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.388764Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.389418Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.393465Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-01T21:51:48.454532Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.970777Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.971478Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.975495Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-01T21:51:49.036499Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.352092Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.352750Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.356370Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-01T21:51:49.417593Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.418027Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.418250Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.418840Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.419571Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.426116Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:49.427908Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:49.428959Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:49.485080Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.485196Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.485224Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.485530Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.485910Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.490699Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:49.492195Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:49.551226Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.551324Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.551641Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.555200Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:49.616369Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.734700Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:51:58.986197Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:51:58.986197Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] 
[2026-06-01T21:51:58.986197Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:51:58.986289Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] 
[2026-06-01T21:51:58.986297Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:51:58.986305Z] [nf-b08956dc14bddef04aa6d104f1de874c-8f7f3-j2xql] [621_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec