Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/01be7a416b25b7a0095be79c8073a4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/01be7a416b25b7a0095be79c8073a4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a19b5d9fae2acdd3f45de59d7ae393/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a19b5d9fae2acdd3f45de59d7ae393/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-01T21:51:47.066766Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:47.067537Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:47.067557Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:47.067563Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:47.067567Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPJKi9M'
[2026-06-01T21:51:47.067571Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:47.067577Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:47.067581Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:47.067585Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:47.067588Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:47.067592Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:47.067596Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:47.067599Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:47.067604Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:47.068592Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:47.068777Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:47.075363Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:47.076577Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:47.076793Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:47.077195Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:47.077603Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.078252Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.078381Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.078462Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.078588Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.078718Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.079303Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.079473Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.079624Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.079923Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.083246Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.083662Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:47.084086Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.084342Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.084735Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.084810Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.084929Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.084995Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085109Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085173Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085387Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085455Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085567Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085636Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085748Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085861Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.086318Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.086606Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.086726Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.086794Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.086905Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.086999Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087112Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087175Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087287Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087352Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087463Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087537Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.087842Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.088313Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.088503Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.088580Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.088753Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.088823Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.089528Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.089930Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090099Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090169Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090389Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090458Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090569Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090633Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090745Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090808Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090921Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.090985Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.091451Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.091860Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.091974Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092037Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092149Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092210Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092325Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092388Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092495Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092563Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092678Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.092743Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.110434Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.110733Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.110823Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.111015Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.111088Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.111176Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.111261Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.113147Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.113572Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:47.113790Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.113930Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:47.114996Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.115550Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.116249Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.117393Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.118826Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.119806Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.120912Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.124633Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.125047Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:51:47.133666Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:51:47.134077Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:47.137629Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:51:47.142499Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:51:47.145300Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:51:47.149775Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:51:47.262988Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.263739Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.268677Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:48.416812Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:48.431912Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.432012Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.432808Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.433395Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.438219Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:51:48.440306Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:51:48.499182Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.500095Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.504367Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:48.564776Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.565677Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.569510Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:48.631068Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.632022Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.636323Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:51:48.897904Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.898969Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.902760Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:49.465491Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.466394Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.469610Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:51:49.530998Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.531930Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.535327Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:49.596593Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.597433Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.601601Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:51:49.662128Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.663058Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.666524Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:49.679329Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.680162Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.683398Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:49.713022Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.713882Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.717370Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:51:49.718332Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.719079Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.722263Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:51:49.751683Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.752473Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.755453Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:51:49.816868Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.817689Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.820887Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:51:49.882280Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.883101Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.886532Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:51:50.098443Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.099264Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.102529Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:50.163986Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.164810Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.169171Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:50.229923Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.230737Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.234893Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:50.295397Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.295501Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.296233Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.296536Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.300501Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:51:50.301875Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:51:50.361550Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.362352Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.365945Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:50.477251Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.478049Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.481172Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:50.542650Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.543399Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.546543Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:51:51.008939Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.009731Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.013699Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:51:51.074579Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.074709Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.075388Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.075891Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.079968Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:51:51.081555Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:51:51.142993Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.143108Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.143788Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.144107Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.147880Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:51:51.150348Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:51.209182Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.209902Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.210411Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.211628Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.215383Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:51:51.216476Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:51.244138Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.244877Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.247883Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.248832Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.249348Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:51:51.251954Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:51:51.313740Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.313835Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.314476Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.314865Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.318558Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:51:51.319721Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:51:51.379895Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.380611Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.384803Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:51:52.297817Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.298594Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.302284Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:51:52.363328Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.363995Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.367371Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:52.679314Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.679938Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.683326Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:51:52.894951Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.895499Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.898566Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:51:52.959899Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.960487Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.963564Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:53.024750Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.025314Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.028460Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:51:53.089551Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.090127Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.093477Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:51:53.305498Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.306057Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.309501Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:53.322632Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.323168Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.326258Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:51:53.387209Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.387756Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.391090Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:51:53.452002Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.452088Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.452574Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.454411Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.456284Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:53.457393Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:51:53.519222Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.519310Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.519790Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.520065Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.523418Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:51:53.524672Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:53.584842Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.585374Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.588323Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:51:53.649562Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.014503Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.015032Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.018583Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:51:54.079348Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.243835Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.244344Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.247193Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:54.308501Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.372647Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.373103Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.376199Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:51:54.437467Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.501779Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.502202Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.505086Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:54.519530Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.519948Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.522589Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:51:54.523504Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.523873Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.526882Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:51:54.539611Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.571483Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.571545Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.835864Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.836326Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.839541Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:54.900436Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.900669Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.900782Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.901081Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.901437Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.905649Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:54.906946Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:54.907936Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:54.966831Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.966895Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.966920Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.967114Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.967462Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.970241Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:54.971345Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:54.999541Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.999600Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.999766Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.002417Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:55.031665Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:57.700973Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:05.956586Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:05.956586Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] 
[2026-06-01T21:52:05.956586Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:05.956681Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] 
[2026-06-01T21:52:05.956689Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:05.956698Z] [nf-c601be7a416b25b7a0095be79c8073a4-a7bc8-qkmfq] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec