[2026-06-01T21:51:44.506915Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:44.507877Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:44.507889Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:44.507893Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:44.507897Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxw4BQv'
[2026-06-01T21:51:44.507901Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:44.507906Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:44.507909Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:44.507913Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:44.507917Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:44.507920Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:44.507924Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:44.507927Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:44.507931Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:44.508984Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:44.509102Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:44.515043Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:44.515707Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:44.515946Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:44.516288Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:44.516560Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.516928Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517021Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517093Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517210Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517277Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517405Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517469Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517586Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517650Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.517891Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.518522Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.518796Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.519051Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.519151Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.519710Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.522140Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.522452Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.522584Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.522717Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:44.523001Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.523177Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.523305Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.523405Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.523913Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524148Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524280Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524349Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524463Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524538Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524652Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524789Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.524965Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.525029Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.525158Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.525356Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.525712Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.526068Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.526401Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.526853Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.527374Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.527449Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.527575Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.527642Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.528127Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.528204Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.528378Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.528806Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529298Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529371Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529489Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529555Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529674Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529737Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529850Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.529913Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.530025Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.530094Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.530213Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.530378Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531092Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531181Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531334Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531401Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531515Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531590Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531720Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.531786Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.547834Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.547948Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.548052Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.548237Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.548314Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.548413Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.548513Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.549961Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.550247Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.550487Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:44.552311Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.553001Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.553849Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.554781Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.555534Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.556667Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.557527Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.559090Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.560340Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.565079Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:51:44.569325Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:51:44.572287Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:51:44.576330Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:44.580460Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:51:44.583843Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:51:44.585092Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:51:44.728705Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.729782Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.734039Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:45.547560Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.548782Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.552778Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:51:46.166071Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.167023Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.171099Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:46.231860Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.232806Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.236688Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:46.361539Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:51:46.397842Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.397954Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.399010Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.399426Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.403588Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:51:46.404773Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:46.464584Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.464682Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.465775Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.466190Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.470678Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:51:46.471825Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:51:46.533649Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.533758Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.534755Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.535171Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.539618Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:51:46.541064Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:46.600687Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.601663Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.605173Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:51:47.017949Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.019024Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.022743Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:51:47.084047Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.085015Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.088783Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:47.150048Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.150887Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.154525Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:51:47.155108Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.155957Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.159508Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:47.220826Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.221708Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.226180Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:47.286650Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.287508Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.291498Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:47.402721Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.403686Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.407189Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:47.468573Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.469476Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.473418Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:51:47.685116Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.686551Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.690616Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:47.751501Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.752658Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.756625Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:51:47.867822Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.867920Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.868796Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.869979Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.874562Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:51:47.875655Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:47.935517Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.935636Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.936504Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.937097Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.941023Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:47.942182Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:51:48.001908Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.002976Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.007955Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:51:48.269825Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.271004Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.274960Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:51:48.586967Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.587073Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.588218Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.588861Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.593288Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:51:48.594839Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:51:48.654345Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.654484Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.655501Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.656181Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.661277Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:48.662807Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:51:48.724437Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.724557Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.724614Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.725942Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.726560Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.727256Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.732868Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:48.734215Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:48.736540Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:51:48.794391Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.794523Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.795473Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.796154Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.800716Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:48.802038Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:51:48.861726Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.861880Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.862925Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.863442Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.868289Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:51:48.868670Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:51:49.880742Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.881868Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.885473Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:51:50.047143Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.048218Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.052274Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:50.113152Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.113951Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.118490Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:50.631175Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.631923Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.635297Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:51:50.696731Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.697414Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.701742Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:51:50.713887Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.714581Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.718443Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:51:50.747480Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.748250Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.752378Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:51:50.752756Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.753363Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.756238Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:51:50.785508Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.786175Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.789857Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:51:50.790991Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.791585Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.795242Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:50.823996Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.824666Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.828487Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:50.829078Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.829689Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.833011Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:51:50.944916Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.945638Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.949296Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:51:51.010700Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.426254Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.427020Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.430890Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:51:51.491563Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.806730Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.807342Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.810893Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:51.872070Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.936631Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.937181Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.940502Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:51:52.002012Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.216959Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.217569Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.221727Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:51:52.282529Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.697844Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.698511Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.701714Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:52.763408Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.928241Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.928843Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:52.932125Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:51:52.993679Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.309883Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.310521Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.313819Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:51:53.375337Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.375941Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.379355Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:51:53.440434Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.440791Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.441001Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.441623Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.442507Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.448442Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:53.450922Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:53.476446Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:53.477322Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.477461Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.477848Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.478398Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.478589Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.482517Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:53.484155Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:53.543400Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.543500Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.543771Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.547283Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:53.576392Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:55.094800Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:03.396959Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:03.396959Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] 
[2026-06-01T21:52:03.396959Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:03.397048Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] 
[2026-06-01T21:52:03.397057Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:03.397066Z] [nf-1c92199f1fcee79fcdcda535e228a4e8-eb247-n6pgw] [580_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec