[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXZe6wAk/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXZe6wAk/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXZe6wAk/chr19_15162349-15162662.bed.gz.tbi
[2026-06-01T21:51:38.172496Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:38.178037Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:38.178081Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:38.178089Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:38.178098Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZe6wAk'
[2026-06-01T21:51:38.178108Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:38.178120Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:38.178124Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:38.178128Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:38.178138Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:38.178144Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:38.178148Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:38.178152Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:38.178156Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:38.178804Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:38.178943Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:38.185381Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:38.186256Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:38.186439Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:38.186809Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:38.187109Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187450Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187545Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187618Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187747Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187815Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187935Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.187997Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.188113Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.188225Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.188623Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.188924Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.189062Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.189370Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.189481Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.190390Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.192801Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.193766Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.193930Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:38.194069Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.194304Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.194581Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.194985Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195057Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195180Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195247Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195361Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195426Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195536Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195603Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195712Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195781Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.195912Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.196229Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.196773Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.196905Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.197169Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.197647Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.198007Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.198076Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.198194Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.198257Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.198367Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.198432Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.199313Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.199932Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.200164Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.200336Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.200474Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.200633Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201111Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201447Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201564Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201631Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201747Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201812Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201927Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.201993Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.202103Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.202169Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.202280Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.202342Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.202628Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.203287Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.203466Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.203546Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.218976Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219079Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219153Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219327Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219405Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219509Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219583Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219696Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.219774Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.221108Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:38.223197Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.223853Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.224320Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.224940Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.225749Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.226513Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.229150Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:38.230219Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.231844Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.232689Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.241286Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:51:38.241741Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:51:38.244497Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:38.247706Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:38.252481Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:38.253225Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:38.253746Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:38.350564Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.350630Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.351338Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.351779Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.357904Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:51:38.358342Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:39.220392Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.221266Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.225340Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:51:39.336455Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.336551Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.337419Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.337840Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.342875Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:39.344345Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:39.854572Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.855519Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.859401Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:39.970681Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.970792Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.971799Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.972320Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.976707Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-01T21:51:39.978180Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-01T21:51:40.037471Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.037539Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.038225Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.038826Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.042330Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-01T21:51:40.043798Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:51:40.103232Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.103903Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.107277Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:51:40.318577Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.319381Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.322877Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:51:40.383891Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.384903Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.388603Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-01T21:51:40.449550Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.450636Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.453290Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.454349Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.454844Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:40.458461Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:41.020862Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.021654Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.025669Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:41.087034Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.087849Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.091446Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-01T21:51:41.152813Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.153993Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.157777Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:51:41.570013Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.571040Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.574600Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-01T21:51:41.635759Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.636809Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.640513Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:51:41.901882Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.902637Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.906310Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:51:41.967439Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.968153Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.971468Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-01T21:51:42.032833Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.033633Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.037386Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:42.198718Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.199493Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.203017Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:42.264198Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.264937Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.268798Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-01T21:51:42.297353Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.297944Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.301350Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-01T21:51:42.306281Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.306888Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.309732Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-01T21:51:42.338967Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.339905Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.340197Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.341454Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.344612Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:51:42.345715Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:42.457731Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.458425Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.462241Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-01T21:51:42.523317Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.524012Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.527886Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:51:42.540431Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.541054Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.544341Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:42.605390Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.605471Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.606108Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.606707Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.611488Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:51:42.612300Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:51:42.623451Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.624193Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.627413Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-01T21:51:42.688919Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.689660Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.692889Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-01T21:51:42.754151Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.754878Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.758491Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-01T21:51:42.770970Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.771538Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.774678Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-01T21:51:42.803731Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.804415Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.808297Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:51:42.821100Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.821724Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.824688Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-01T21:51:42.885864Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.886623Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.889785Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-01T21:51:42.951062Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.951770Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.955218Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-01T21:51:43.016794Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.017484Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.021047Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:51:43.082164Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.082906Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.086402Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-01T21:51:43.147618Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.148291Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.151922Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:43.213372Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.213906Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.217815Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-01T21:51:43.278422Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.279121Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.282582Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-01T21:51:43.344035Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.344722Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.348828Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:51:43.510031Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.510678Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.514889Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:43.575716Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.576273Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.579724Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-01T21:51:43.640854Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.056274Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.056914Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.060203Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:44.121449Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.235853Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.236437Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.239444Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-01T21:51:44.301089Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.301185Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.301674Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.305071Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-01T21:51:44.366156Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.480528Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.480624Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.481115Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.481438Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.485225Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-01T21:51:44.486288Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-01T21:51:44.546209Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.546302Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.660702Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.661209Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.664766Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-01T21:51:44.726035Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.941033Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.941638Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.945057Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:45.006299Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.006750Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.006971Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.007393Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.007795Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.012657Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:45.014089Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:45.042852Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:45.074432Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.074530Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.074559Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.074867Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.075301Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.078763Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:45.079710Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:45.108035Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.109697Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.109991Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.112919Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:45.142331Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.768105Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:51:57.066880Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:51:57.066880Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] 
[2026-06-01T21:51:57.066880Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:51:57.066974Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] 
[2026-06-01T21:51:57.066982Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:51:57.066992Z] [nf-dc1df7ae15e35d2ccac0bc955a8a6b66-91ea3-kqmp7] [623_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec