cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.1s, est remaining 1.2s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 2079
progress 10% @chr2:19997134, elapsed 0.1s, est remaining 1.1s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 2287
progress 15% @chr2:189053424, elapsed 0.2s, est remaining 1.0s, peak mem 182MB, user 0.0s, sys 0.0s, output queue size 12686
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.9s, peak mem 191MB, user 0.0s, sys 0.0s, output queue size 23150
progress 25% @chr4:88457270, elapsed 0.3s, est remaining 0.9s, peak mem 194MB, user 0.0s, sys 0.0s, output queue size 330
progress 30% @chr5:146589947, elapsed 0.3s, est remaining 0.8s, peak mem 212MB, user 0.0s, sys 0.0s, output queue size 10370
progress 35% @chr6:127144950, elapsed 0.4s, est remaining 0.7s, peak mem 212MB, user 0.0s, sys 0.0s, output queue size 20315
progress 40% @chr7:128814638, elapsed 0.4s, est remaining 0.7s, peak mem 221MB, user 0.0s, sys 0.0s, output queue size 29808
progress 45% @chr9:710804, elapsed 0.5s, est remaining 0.6s, peak mem 383MB, user 0.0s, sys 0.1s, output queue size 39170
progress 50% @chr10:32284698, elapsed 0.5s, est remaining 0.5s, peak mem 419MB, user 0.0s, sys 0.1s, output queue size 49114
progress 55% @chr11:48324941, elapsed 0.6s, est remaining 0.5s, peak mem 446MB, user 0.0s, sys 0.1s, output queue size 59582
progress 60% @chr12:22046304, elapsed 0.7s, est remaining 0.4s, peak mem 452MB, user 0.0s, sys 0.1s, output queue size 69163
progress 65% @chr13:49197725, elapsed 0.7s, est remaining 0.4s, peak mem 476MB, user 0.0s, sys 0.1s, output queue size 80182
progress 70% @chr15:42684116, elapsed 0.8s, est remaining 0.3s, peak mem 491MB, user 0.0s, sys 0.1s, output queue size 90214
progress 75% @chr16:30766379, elapsed 0.8s, est remaining 0.3s, peak mem 491MB, user 0.0s, sys 0.1s, output queue size 99779
progress 80% @chr17:42562612, elapsed 0.9s, est remaining 0.2s, peak mem 491MB, user 0.0s, sys 0.1s, output queue size 110474
progress 85% @chr19:5680055, elapsed 1.0s, est remaining 0.2s, peak mem 494MB, user 0.0s, sys 0.1s, output queue size 8864
progress 90% @chr19:55772602, elapsed 1.0s, est remaining 0.1s, peak mem 494MB, user 0.0s, sys 0.1s, output queue size 18369
progress 95% @chr22:36937342, elapsed 1.5s, est remaining 0.1s, peak mem 2471MB, user 7.2s, sys 4.1s, output queue size 3245
progress 100% @chr6_GL000251v2_alt:3934019, elapsed 1.5s, est remaining 0.0s, peak mem 2471MB, user 7.4s, sys 4.2s, output queue size 2324
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047058
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.589 user 0.128 sys 2.186 real
done: 1 calls 0.295 user 0.185 sys 0.484 real
execute: 1 calls 0.000 user 0.010 sys 1.556 real
fetch_reads: 208647 calls 0.084 user 0.001 sys 0.198 real
fetch_ref: 2079 calls 0.034 user 0.021 sys 0.027 real
fetch_vcf: 2079 calls 0.840 user 0.031 sys 0.946 real
idle: 92 calls 0.002 user 0.002 sys 31.634 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 5.813 user 3.925 sys 10.243 real
overall: 2591854592 mem 11.617 user 21.288 sys 2.959 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory