cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 2.0s, peak mem 296MB, user 0.3s, sys 2.4s, output queue size 10
progress 10% @chr2:75000001, elapsed 0.2s, est remaining 1.7s, peak mem 533MB, user 0.7s, sys 4.7s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.3s, est remaining 1.6s, peak mem 608MB, user 1.0s, sys 6.9s, output queue size 19
progress 20% @chr3:155000001, elapsed 0.4s, est remaining 1.4s, peak mem 728MB, user 1.3s, sys 9.2s, output queue size 24
progress 25% @chr4:114000001, elapsed 0.4s, est remaining 1.3s, peak mem 821MB, user 1.6s, sys 11.5s, output queue size 21
progress 30% @chr5:75000001, elapsed 0.5s, est remaining 1.2s, peak mem 899MB, user 1.8s, sys 13.7s, output queue size 24
progress 35% @chr6:67000001, elapsed 0.6s, est remaining 1.1s, peak mem 968MB, user 2.0s, sys 16.0s, output queue size 9
progress 40% @chr7:55000001, elapsed 0.7s, est remaining 1.0s, peak mem 1022MB, user 2.2s, sys 18.2s, output queue size 7
progress 45% @chr8:57000001, elapsed 0.8s, est remaining 0.9s, peak mem 1121MB, user 2.5s, sys 20.5s, output queue size 14
progress 50% @chr9:75000001, elapsed 0.8s, est remaining 0.8s, peak mem 1193MB, user 2.7s, sys 22.8s, output queue size 20
progress 55% @chr10:96000001, elapsed 0.9s, est remaining 0.8s, peak mem 1250MB, user 2.9s, sys 25.0s, output queue size 7
progress 60% @chr11:125000001, elapsed 1.0s, est remaining 0.7s, peak mem 1319MB, user 3.2s, sys 27.2s, output queue size 11
progress 65% @chr13:16000001, elapsed 1.1s, est remaining 0.6s, peak mem 1385MB, user 3.4s, sys 29.4s, output queue size 15
progress 70% @chr14:60000001, elapsed 1.2s, est remaining 0.5s, peak mem 1469MB, user 3.7s, sys 31.6s, output queue size 1
progress 75% @chr16:14000001, elapsed 1.2s, est remaining 0.4s, peak mem 1520MB, user 4.0s, sys 33.9s, output queue size 23
progress 80% @chr18:1, elapsed 1.3s, est remaining 0.3s, peak mem 1553MB, user 4.2s, sys 36.2s, output queue size 24
progress 85% @chr20:20000001, elapsed 1.4s, est remaining 0.2s, peak mem 1598MB, user 4.5s, sys 38.4s, output queue size 2
progress 90% @chrX:42000001, elapsed 1.8s, est remaining 0.2s, peak mem 2780MB, user 7.8s, sys 40.5s, output queue size 114
progress 95% @chrY:33000001, elapsed 2.0s, est remaining 0.1s, peak mem 2807MB, user 11.5s, sys 42.6s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.2s, est remaining 0.0s, peak mem 2813MB, user 23.5s, sys 46.0s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290598
output file size: 74586802
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.001 sys 0.018 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.767 user 5.587 sys 7.451 real
done: 1 calls 0.403 user 0.390 sys 0.796 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.000 sys 4.270 real
fetch: 3219322 calls 0.393 user 5.106 sys 5.851 real
fetch_reads: 3219322 calls 0.471 user 5.218 sys 5.944 real
fetch_ref: 13318 calls 0.046 user 0.009 sys 0.061 real
fetch_vcf: 13318 calls 1.308 user 0.052 sys 1.383 real
idle: 1726 calls 0.900 user 0.348 sys 114.280 real
init: 1 calls 0.011 user 0.001 sys 0.025 real
update: 13537 calls 5.914 user 1.628 sys 8.268 real
write: 3219322 calls 9.304 user 5.901 sys 15.131 real
overall: 2949648384 mem 27.208 user 47.574 sys 6.441 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.002 sys 0.027 real
done: 1 calls 0.048 user 0.012 sys 0.056 real
idle: 60 calls 0.002 user 0.000 sys 31.401 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.074 user 0.037 sys 1.054 real