cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 0.0s, est remaining 0.6s, peak mem 155MB, user 0.0s, sys 0.8s, output queue size 140
progress 10% @chr2:80000001, elapsed 0.1s, est remaining 0.5s, peak mem 155MB, user 0.1s, sys 1.9s, output queue size 56
progress 15% @chr2:239000001, elapsed 0.1s, est remaining 0.4s, peak mem 155MB, user 0.2s, sys 3.2s, output queue size 207
progress 20% @chr3:153000001, elapsed 0.1s, est remaining 0.4s, peak mem 155MB, user 0.2s, sys 4.5s, output queue size 256
progress 25% @chr4:117000001, elapsed 0.1s, est remaining 0.4s, peak mem 155MB, user 0.4s, sys 5.5s, output queue size 54
progress 30% @chr5:90000001, elapsed 0.1s, est remaining 0.3s, peak mem 155MB, user 0.5s, sys 6.8s, output queue size 75
progress 35% @chr6:67000001, elapsed 0.2s, est remaining 0.3s, peak mem 155MB, user 0.7s, sys 7.9s, output queue size 31
progress 40% @chr7:60000001, elapsed 0.2s, est remaining 0.3s, peak mem 155MB, user 0.8s, sys 9.0s, output queue size 132
progress 45% @chr8:62000001, elapsed 0.2s, est remaining 0.3s, peak mem 155MB, user 1.0s, sys 10.2s, output queue size 137
progress 50% @chr9:74000001, elapsed 0.2s, est remaining 0.2s, peak mem 155MB, user 1.1s, sys 11.5s, output queue size 109
progress 55% @chr10:93000001, elapsed 0.3s, est remaining 0.2s, peak mem 155MB, user 1.2s, sys 12.7s, output queue size 156
progress 60% @chr11:113000001, elapsed 0.3s, est remaining 0.2s, peak mem 155MB, user 1.4s, sys 13.8s, output queue size 317
progress 65% @chr13:43000001, elapsed 0.3s, est remaining 0.2s, peak mem 155MB, user 1.6s, sys 14.7s, output queue size 480
progress 70% @chr14:68000001, elapsed 0.3s, est remaining 0.1s, peak mem 155MB, user 1.8s, sys 15.9s, output queue size 133
progress 75% @chr16:15000001, elapsed 0.4s, est remaining 0.1s, peak mem 155MB, user 2.0s, sys 16.9s, output queue size 294
progress 80% @chr18:11000001, elapsed 0.4s, est remaining 0.1s, peak mem 155MB, user 2.1s, sys 17.7s, output queue size 456
progress 85% @chr20:28000001, elapsed 0.4s, est remaining 0.1s, peak mem 156MB, user 2.3s, sys 18.9s, output queue size 618
progress 90% @chrX:19000001, elapsed 0.4s, est remaining 0.0s, peak mem 157MB, user 2.7s, sys 20.0s, output queue size 780
progress 95% @chrY:28000001, elapsed 0.4s, est remaining 0.0s, peak mem 157MB, user 2.8s, sys 21.0s, output queue size 993
progress 100% @HLA-B*35:01:01:01:1, elapsed 0.5s, est remaining 0.0s, peak mem 165MB, user 3.0s, sys 22.3s, output queue size 4366
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 64 max 64
algo: TNfilter
license: sentieon:TNhaplotyper=64
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.011 real
"predict_filter": 171 calls 0.000 user 0.000 sys 0.007 real
advance: 3219322 calls 0.459 user 8.853 sys 13.276 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.003 sys 0.541 real
fetch_ref: 448 calls 0.000 user 0.008 sys 0.005 real
idle: 19657 calls 0.418 user 0.227 sys 87.837 real
init: 1 calls 0.180 user 0.052 sys 0.379 real
overall: 174141440 mem 4.064 user 23.777 sys 1.946 real