Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/1c6389be824c7a3d6dbab783f29ae2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/1c6389be824c7a3d6dbab783f29ae2/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-01T21:51:59.236752Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:59.238116Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:59.238143Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:59.238149Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:59.238154Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXMSLq6y'
[2026-06-01T21:51:59.238159Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:59.238179Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:59.238185Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:59.238189Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:59.238199Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:59.238205Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:59.238213Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:59.238226Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:59.238238Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:59.238781Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:59.238899Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:59.245229Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:59.245989Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:59.246240Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:59.246638Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:59.247187Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.247665Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.247768Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.247843Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.247965Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.248036Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.248190Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.248324Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.248871Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.249424Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.249638Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.250120Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.250232Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.251349Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.251835Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.252189Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.254642Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.255293Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:59.256266Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.256634Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.256920Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.256993Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257109Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257178Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257293Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257359Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257477Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257546Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.257822Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.258155Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.258748Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.258823Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.258948Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259009Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259122Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259183Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259295Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259362Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259473Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259542Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259698Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259777Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259892Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.259959Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.261719Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262027Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262157Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262303Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262421Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262486Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262593Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262657Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262766Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262824Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.262937Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.263017Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.263246Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.263599Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.264495Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.264568Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.264684Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.264746Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.264871Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.264936Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.265051Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.265121Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.265232Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.265290Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.279653Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.279779Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.279862Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.280046Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.280140Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.280243Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.281821Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.282327Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.282637Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.282699Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:59.284839Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.285775Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.286775Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.287907Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.288799Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.289728Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.292666Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.294359Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:59.295005Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.296024Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.299667Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:51:59.306463Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:51:59.310861Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:51:59.314965Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:51:59.320738Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:52:01.479085Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.480890Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.485000Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:52:01.846845Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.848343Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.853140Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:52:01.964022Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.965253Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.969356Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:52:02.035466Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:52:02.080274Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.081513Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.085536Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:52:02.146374Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.147812Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.152408Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:52:02.263562Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.264910Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.268592Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-01T21:52:02.329757Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.329862Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.329893Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.330818Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.331375Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.331701Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.336597Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:52:02.338221Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:52:02.339381Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:52:02.397853Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.397956Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.398885Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.399306Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.405296Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:52:02.405709Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:52:02.417397Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.418317Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.421545Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-01T21:52:02.482755Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.482871Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.484034Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.484536Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.489232Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:52:02.490486Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:52:02.625647Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:52:02.649498Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.649785Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.651034Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.651841Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.655870Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-01T21:52:02.657271Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-01T21:52:02.716767Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.716862Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.717827Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.718351Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.722304Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-01T21:52:02.723508Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:52:02.783315Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.784592Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.788962Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:52:03.401441Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.402432Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.406306Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:52:03.467855Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.468916Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.472512Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:52:03.533556Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.534429Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.538264Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:52:03.699956Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.700929Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.704176Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:52:03.765515Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.765628Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.766516Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.766890Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.770857Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-01T21:52:03.772368Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:52:03.831913Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.832852Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.836469Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:52:03.865532Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.866627Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.870032Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-01T21:52:03.931116Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.931905Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.936157Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:52:03.996800Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.997680Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.001479Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:52:04.163366Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.164286Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.168110Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-01T21:52:04.229095Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.230342Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.234680Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:52:04.847185Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.847325Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.848237Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.848708Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.852472Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-01T21:52:04.853748Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-01T21:52:04.913382Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.913493Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.914646Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.915160Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.919220Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-01T21:52:04.920391Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:52:04.980348Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.981344Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.985154Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:52:05.196781Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.197789Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.201291Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-01T21:52:05.262559Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.263554Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.266884Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-01T21:52:05.327970Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.329028Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.332636Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:52:05.895337Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.896521Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.900309Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:52:05.961585Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.961685Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.962551Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.963391Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.967152Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-01T21:52:05.968482Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:52:06.028305Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.029121Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.033045Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-01T21:52:06.037639Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.038411Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.044087Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:52:06.072367Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.073203Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.076955Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-01T21:52:06.077671Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.078479Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.081986Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:52:06.143184Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.144087Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.148166Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:52:06.509998Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.510918Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.515138Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-01T21:52:06.575935Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.576812Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.580544Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:52:06.609219Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.610142Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.614268Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-01T21:52:06.614521Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.614982Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.618432Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:52:06.679658Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.711923Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.712009Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.712723Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.713329Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.717080Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:52:06.717961Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:52:06.778249Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:06.778375Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.143620Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.144438Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.148229Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:52:07.209379Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.775395Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.775978Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.779508Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:52:07.840754Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.841394Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.844835Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-01T21:52:07.873845Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.874431Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.877673Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-01T21:52:07.882472Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:07.914460Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.129217Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.130074Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.132993Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:52:08.195055Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.710244Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.710797Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.714004Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-01T21:52:08.743406Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.743701Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.743843Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.744159Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.744516Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.748734Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:52:08.750089Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:52:08.751013Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:52:08.777411Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.777493Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.777901Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.778207Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.778717Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.781618Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:52:08.809815Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:52:08.811234Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.811299Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.811491Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:52:08.814309Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:52:08.875760Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:09.841499Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:18.126756Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:18.126756Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] 
[2026-06-01T21:52:18.126756Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:18.126842Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] 
[2026-06-01T21:52:18.126848Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:18.126856Z] [nf-f71c6389be824c7a3d6dbab783f29ae2-4a8c5-p8knw] [608_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec