Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/8f9b404e8f197c3caba2f661affa17/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/8f9b404e8f197c3caba2f661affa17/.command.run
==> STAGING COMPLETE (10 inputs)
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[2026-06-01T21:51:44.250156Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:44.251104Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:44.251115Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:44.251120Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:44.251124Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXpvzYHU'
[2026-06-01T21:51:44.251128Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:44.251133Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:44.251136Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:44.251140Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:44.251144Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:44.251150Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:44.251155Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:44.251158Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:44.251170Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:44.251687Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:44.251795Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:44.257751Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:44.258468Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:44.258739Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:44.258932Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:44.259231Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.260607Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.260782Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.261167Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.261335Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.261696Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.261842Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.263875Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.264375Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.264706Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:44.264800Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265053Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265175Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265244Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265368Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265436Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265544Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265610Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265722Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265782Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.265963Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.266037Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.266358Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.266729Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.266857Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.266922Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267035Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267097Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267220Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267289Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267402Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267477Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267593Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.267685Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.268379Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.268483Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.268653Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.268738Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.268863Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.268931Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.269041Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.269129Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.269241Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.269307Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.269482Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.269731Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270217Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270286Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270471Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270552Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270664Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270730Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270840Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.270903Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.271011Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.271072Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285298Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285413Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285493Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285652Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285727Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285812Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285883Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.285992Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.286059Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:44.286108Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:44.294683Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.295401Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.295728Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.296201Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.297126Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.297669Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.298732Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.301253Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.302431Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.308253Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:44.316756Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-01T21:51:44.318041Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-01T21:51:44.321251Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-01T21:51:44.323557Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-01T21:51:44.325790Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-01T21:51:44.328058Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-01T21:51:44.329032Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-01T21:51:44.419661Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.420497Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428872Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:45.437321Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.438123Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.442222Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-01T21:51:45.552937Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.553824Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.557486Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-01T21:51:45.586298Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.587242Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.590738Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-01T21:51:45.651858Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.652645Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.655729Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-01T21:51:45.716976Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.717821Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.721135Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-01T21:51:46.333697Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.334509Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.338666Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-01T21:51:46.351124Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.351769Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.354829Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-01T21:51:46.383880Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.384723Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.388486Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-01T21:51:46.401353Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.402227Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.405919Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-01T21:51:46.466824Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.467704Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.471230Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:46.883425Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.884133Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.887415Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-01T21:51:46.998857Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.999471Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.003024Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:47.064011Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.064692Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.067757Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-01T21:51:47.128927Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.129608Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.132779Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-01T21:51:47.344531Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.345227Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.348561Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-01T21:51:47.409831Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.410491Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.413681Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-01T21:51:47.474963Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.475641Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.478873Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-01T21:51:47.540332Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.541016Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.545066Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-01T21:51:47.656093Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.656876Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.660279Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-01T21:51:47.721629Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.722310Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.726294Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:47.787039Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.787694Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.790821Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-01T21:51:47.852154Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.852831Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.856819Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-01T21:51:47.917439Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.918101Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.921147Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-01T21:51:47.982455Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.982567Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.983171Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.983709Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.987322Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-01T21:51:47.988645Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-01T21:51:48.048487Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.049117Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.052977Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-01T21:51:48.113762Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.113875Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.114455Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.114833Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.118330Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-01T21:51:48.119412Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-01T21:51:48.179218Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.179304Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.179829Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.180146Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.183934Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-01T21:51:48.185178Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-01T21:51:48.245528Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.245629Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.246184Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.246539Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.251349Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-01T21:51:48.252974Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-01T21:51:48.362659Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.363288Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.367258Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-01T21:51:48.427728Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.428278Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.431680Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-01T21:51:48.492809Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.493313Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.496651Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-01T21:51:48.558011Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.558569Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.561579Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-01T21:51:48.622914Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.623493Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.627038Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-01T21:51:48.788416Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.789012Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.793155Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-01T21:51:48.854009Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.854591Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.858689Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-01T21:51:48.919619Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.033985Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.034520Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.038264Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-01T21:51:49.098916Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.514523Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.515020Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.518342Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-01T21:51:49.579343Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.794323Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.794868Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.798748Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-01T21:51:49.859582Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.973875Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.974347Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.978395Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-01T21:51:50.039020Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.304099Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.304592Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.308443Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-01T21:51:50.369306Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.934927Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.935414Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.939797Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-01T21:51:51.001312Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.416363Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.416856Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.419796Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-01T21:51:51.481352Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.481647Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.481815Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.482140Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.482381Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.487704Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:51.487961Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:51.488963Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:51.547411Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.547507Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.547530Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.547808Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.548143Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.551824Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:51.552509Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:51.612856Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.612957Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.613203Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:51.616125Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:51.677974Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:54.850407Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:03.139241Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:03.139241Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner]
[2026-06-01T21:52:03.139241Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-01T21:52:03.139312Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner]
[2026-06-01T21:52:03.139319Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:03.139326Z] [nf-b08f9b404e8f197c3caba2f661affa17-e786a-4smcm] [582_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec