File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/fa9204504645ef97d6bb408a4b2401/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-01T21:51:38.623225Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:38.635148Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:38.635173Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:38.635180Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:38.635186Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXYp7ETp'
[2026-06-01T21:51:38.635192Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:38.635198Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:38.635204Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:38.635209Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] memMb: 1015785
[2026-06-01T21:51:38.635214Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:38.635220Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:38.635225Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:38.635230Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:38.635236Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:38.635884Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:38.635936Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:38.643284Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:38.643935Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:38.644127Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:38.644382Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:38.644915Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.645822Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.645945Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.646111Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.646643Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.646742Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.646854Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.647094Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.647361Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.647827Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.647969Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.649169Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.649837Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:38.650017Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.650452Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.650714Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.650880Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.650971Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.651123Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.651209Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.651434Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.651526Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.651678Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.651888Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.652283Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.652371Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.652528Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.652616Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.652764Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.652853Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.653001Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.653135Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.653446Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.653836Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.653990Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654093Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654243Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654332Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654481Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654587Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654749Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.654833Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.655128Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.655661Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.655822Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.655909Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.656061Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.656220Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.656372Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.656458Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.656622Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.656793Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.657476Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.657565Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.657714Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.657798Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.657947Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.658036Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.658182Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.658285Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.658568Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659189Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659345Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659433Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659604Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659698Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659862Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.659946Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.660094Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.660202Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.660563Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.661255Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.661402Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.661492Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.681352Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.681817Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.682570Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.682816Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.682988Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.683253Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.683762Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.683975Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.684191Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.684574Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.685036Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.685466Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.686147Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.686527Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:38.686654Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.687712Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:38.688600Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-01T21:51:38.688820Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.690932Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-01T21:51:38.691210Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.691625Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.695282Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:38.699075Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:38.701347Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-01T21:51:38.703442Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:38.703938Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:38.706544Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-01T21:51:38.767767Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.767838Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.768734Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.769445Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:38.773848Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-01T21:51:38.776513Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-01T21:51:39.435857Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.436904Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.440147Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-01T21:51:39.902076Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.903045Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.905885Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-01T21:51:39.967349Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.968386Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:39.971284Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-01T21:51:40.082788Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.083784Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.086900Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-01T21:51:40.198193Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.199147Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.202092Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.202512Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:40.203551Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.206382Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-01T21:51:40.235918Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.237216Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.237789Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.240487Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-01T21:51:40.240812Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:40.243429Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-01T21:51:41.056633Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.057557Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.061057Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:41.122313Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.123240Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.126375Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-01T21:51:41.155491Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.156409Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.159310Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-01T21:51:41.173929Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.174798Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.177974Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:41.207183Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.208073Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.210918Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-01T21:51:41.240238Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.241107Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.243846Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-01T21:51:41.305386Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.306273Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.309005Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-01T21:51:41.338419Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.339582Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.340019Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.342361Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:41.344414Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-01T21:51:41.345624Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-01T21:51:42.008597Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.009449Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.012388Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-01T21:51:42.174106Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.175031Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.178489Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:42.942186Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.943062Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.947266Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-01T21:51:43.258659Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.259542Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.262538Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-01T21:51:43.324122Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.325001Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.328346Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-01T21:51:43.539858Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.540752Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.543655Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:43.655217Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.655301Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.656051Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.656575Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.660094Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:43.661382Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-01T21:51:43.723316Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.724158Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.727350Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-01T21:51:43.788482Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.789287Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.792358Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:43.797332Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.798109Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.801203Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:43.830758Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.831540Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.834930Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:43.896170Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.896976Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.899979Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:43.961337Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.962109Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.965063Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-01T21:51:44.428096Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.428891Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.432149Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-01T21:51:44.493552Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.494368Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.497820Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-01T21:51:44.709620Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.710391Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.713547Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-01T21:51:44.774880Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.775691Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.778919Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-01T21:51:44.841323Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.842163Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.845761Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:44.957142Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.957926Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.961118Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-01T21:51:45.173601Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.174406Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.177846Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-01T21:51:45.239063Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.239880Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.242847Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-01T21:51:45.305803Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.306595Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.310106Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:45.371371Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.372236Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.375952Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-01T21:51:45.587611Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.588426Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.591821Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:45.653356Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.654153Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.657365Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:45.719042Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.719868Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.723382Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-01T21:51:45.784707Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.785501Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.789145Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:45.950711Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.951465Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.954715Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-01T21:51:46.015881Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.016598Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.019577Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-01T21:51:46.082279Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.082369Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.083053Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.085239Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.086941Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-01T21:51:46.088368Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-01T21:51:46.151662Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.151800Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.152451Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.154897Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.155762Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-01T21:51:46.158745Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:46.220516Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.220599Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.221207Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.223203Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.224371Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-01T21:51:46.226836Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:46.256576Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.257248Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.260746Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:46.265822Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.266476Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.269627Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-01T21:51:46.300244Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.300878Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.304281Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-01T21:51:46.309293Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.309387Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.309954Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.310695Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.314108Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:46.315832Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-01T21:51:46.320654Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.321266Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.324788Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:46.354214Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.354291Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.354319Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.370473Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.535298Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.535881Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.539643Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-01T21:51:46.600903Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.966117Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.966681Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.969680Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-01T21:51:47.031261Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.145697Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.146288Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.149640Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-01T21:51:47.211013Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.479666Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.480317Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.483099Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:48.544992Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.545389Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.545583Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.546125Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.546976Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.550838Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:48.552499Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:48.553598Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:48.613073Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.613159Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.613189Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.613481Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.613821Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.617361Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:48.618314Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:48.678821Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.678906Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.679180Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.682332Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:48.743948Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.259527Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:51:57.523759Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:51:57.523759Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] 
[2026-06-01T21:51:57.523759Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:51:57.523830Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] 
[2026-06-01T21:51:57.523842Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:51:57.523851Z] [nf-d8fa9204504645ef97d6bb408a4b2401-e8914-wvn7c] [558_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec