cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.0s, est remaining 0.6s, peak mem 156MB, user 0.1s, sys 1.0s, output queue size 159
progress 10% @chr2:78000001, elapsed 0.1s, est remaining 0.5s, peak mem 156MB, user 0.2s, sys 2.2s, output queue size 77
progress 15% @chr2:175000001, elapsed 0.1s, est remaining 0.5s, peak mem 156MB, user 0.5s, sys 3.4s, output queue size 71
progress 20% @chr3:173000001, elapsed 0.1s, est remaining 0.4s, peak mem 156MB, user 0.6s, sys 4.5s, output queue size 46
progress 25% @chr4:122000001, elapsed 0.1s, est remaining 0.4s, peak mem 156MB, user 0.8s, sys 5.7s, output queue size 106
progress 30% @chr5:97000001, elapsed 0.2s, est remaining 0.4s, peak mem 156MB, user 1.0s, sys 6.8s, output queue size 72
progress 35% @chr6:72000001, elapsed 0.2s, est remaining 0.3s, peak mem 156MB, user 1.0s, sys 8.1s, output queue size 56
progress 40% @chr7:61000001, elapsed 0.2s, est remaining 0.3s, peak mem 156MB, user 1.2s, sys 9.3s, output queue size 132
progress 45% @chr8:60000001, elapsed 0.2s, est remaining 0.3s, peak mem 156MB, user 1.3s, sys 10.4s, output queue size 294
progress 50% @chr9:95000001, elapsed 0.2s, est remaining 0.2s, peak mem 156MB, user 1.5s, sys 11.6s, output queue size 331
progress 55% @chr10:100000001, elapsed 0.3s, est remaining 0.2s, peak mem 156MB, user 1.6s, sys 12.7s, output queue size 403
progress 60% @chr11:129000001, elapsed 0.3s, est remaining 0.2s, peak mem 156MB, user 1.7s, sys 14.0s, output queue size 98
progress 65% @chr13:22000001, elapsed 0.3s, est remaining 0.2s, peak mem 156MB, user 1.9s, sys 15.0s, output queue size 259
progress 70% @chr14:75000001, elapsed 0.3s, est remaining 0.1s, peak mem 156MB, user 2.1s, sys 16.2s, output queue size 196
progress 75% @chr15:60000001, elapsed 0.4s, est remaining 0.1s, peak mem 156MB, user 2.3s, sys 17.3s, output queue size 218
progress 80% @chr18:11000001, elapsed 0.4s, est remaining 0.1s, peak mem 156MB, user 2.4s, sys 18.4s, output queue size 182
progress 85% @chr20:27000001, elapsed 0.4s, est remaining 0.1s, peak mem 156MB, user 2.5s, sys 19.7s, output queue size 344
progress 90% @chrX:28000001, elapsed 0.4s, est remaining 0.0s, peak mem 156MB, user 2.9s, sys 20.7s, output queue size 192
progress 95% @chrY:32000001, elapsed 0.5s, est remaining 0.0s, peak mem 156MB, user 3.1s, sys 21.8s, output queue size 451
progress 100% @HLA-DQB1*05:01:01:02:1, elapsed 0.5s, est remaining 0.0s, peak mem 163MB, user 3.3s, sys 23.3s, output queue size 3778
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 64 max 64
algo: TNfilter
license: sentieon:TNhaplotyper=64
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.002 user 0.000 sys 0.009 real
"predict_filter": 136 calls 0.000 user 0.001 sys 0.005 real
advance: 3219322 calls 0.443 user 9.180 sys 14.836 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 0.635 real
fetch_ref: 384 calls 0.001 user 0.003 sys 0.005 real
idle: 19673 calls 0.438 user 0.206 sys 85.668 real
init: 1 calls 0.128 user 0.081 sys 0.343 real
overall: 172052480 mem 4.437 user 24.832 sys 1.936 real