cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144248877, elapsed 0.0s, est remaining 0.8s, peak mem 75MB, user 0.1s, sys 0.1s, output queue size 2328
progress 10% @chr9:36930833, elapsed 0.1s, est remaining 0.7s, peak mem 75MB, user 0.1s, sys 0.2s, output queue size 1521
progress 15% @chr9:77316174, elapsed 0.1s, est remaining 0.6s, peak mem 87MB, user 0.1s, sys 0.3s, output queue size 3305
progress 20% @chr9:128945687, elapsed 0.1s, est remaining 0.6s, peak mem 99MB, user 0.1s, sys 0.5s, output queue size 5923
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.6s, peak mem 111MB, user 0.2s, sys 0.7s, output queue size 8674
progress 30% @chr10:69248424, elapsed 0.2s, est remaining 0.5s, peak mem 123MB, user 0.2s, sys 0.8s, output queue size 11076
progress 35% @chr10:100502254, elapsed 0.3s, est remaining 0.5s, peak mem 132MB, user 0.2s, sys 1.0s, output queue size 13718
progress 40% @chr11:294556, elapsed 0.3s, est remaining 0.5s, peak mem 141MB, user 0.3s, sys 1.2s, output queue size 16301
progress 45% @chr11:17771665, elapsed 0.4s, est remaining 0.4s, peak mem 156MB, user 0.3s, sys 1.4s, output queue size 18454
progress 50% @chr11:61397774, elapsed 0.4s, est remaining 0.4s, peak mem 162MB, user 0.3s, sys 1.5s, output queue size 20821
progress 55% @chr11:73296485, elapsed 0.4s, est remaining 0.4s, peak mem 174MB, user 0.4s, sys 1.7s, output queue size 23496
progress 60% @chr11:114444541, elapsed 0.5s, est remaining 0.3s, peak mem 180MB, user 0.4s, sys 1.9s, output queue size 25781
progress 65% @chr12:6465842, elapsed 0.5s, est remaining 0.3s, peak mem 189MB, user 0.4s, sys 2.1s, output queue size 28145
progress 70% @chr12:31709293, elapsed 0.6s, est remaining 0.2s, peak mem 207MB, user 0.5s, sys 2.2s, output queue size 30237
progress 75% @chr12:55968049, elapsed 0.6s, est remaining 0.2s, peak mem 210MB, user 0.5s, sys 2.4s, output queue size 32708
progress 80% @chr12:99984104, elapsed 0.7s, est remaining 0.2s, peak mem 213MB, user 0.6s, sys 2.6s, output queue size 35441
progress 85% @chr12:123767606, elapsed 0.7s, est remaining 0.1s, peak mem 237MB, user 0.6s, sys 2.9s, output queue size 38295
progress 90% @chr13:48411389, elapsed 0.8s, est remaining 0.1s, peak mem 246MB, user 0.7s, sys 3.1s, output queue size 40665
progress 95% @chr14:22633768, elapsed 0.8s, est remaining 0.0s, peak mem 252MB, user 0.7s, sys 3.2s, output queue size 42922
progress 100% @chr14:60062011, elapsed 0.9s, est remaining 0.0s, peak mem 264MB, user 0.8s, sys 3.4s, output queue size 45471
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692763
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.014 sys 0.019 real
advance: 50143 calls 0.008 user 0.002 sys 0.020 real
calc: 98785 calls 0.018 user 0.000 sys 0.019 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.002 sys 1.679 real
fetch: 98785 calls 0.000 user 0.010 sys 0.019 real
fetch_ref: 98785 calls 0.107 user 0.045 sys 0.351 real
idle: 39 calls 0.004 user 0.017 sys 22.429 real
init: 1 calls 0.030 user 0.010 sys 0.042 real
region: 98785 calls 0.000 user 0.000 sys 0.021 real
tracker: 98785 calls 0.031 user 0.005 sys 0.091 real
overall: 276987904 mem 1.471 user 5.516 sys 2.796 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory